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McDonald, Daniel, Price, Morgan N., Goodrich, Julia, Nawrocki, Eric P., DeSantis, Todd Z, Probst, Alexander, Andersen, Gary L, Knight, Rob and Hugenholtz, Philip (2012) An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea. ISME Journal, 6 3: 610-618. doi:10.1038/ismej.2011.139 72   277 Cited 271 times in Scopus271 2
Wrighton, Kelly C., Agbo, Peter, Warnecke, Falk, Weber, Karrie A., Brodie, Eoin L., DeSantis, Todd Z., Hugenholtz, Philip, Andersen, Gary L. and Coates, John D. (2008) A novel ecological role of the Firmicutes identified in thermophilic microbial fuel cells. The ISME Journal, 2 11: 1146-1156. doi:10.1038/ismej.2008.48 40   83 Cited 91 times in Scopus91 0
Dalevi, Daniel, DeSantis, Todd Z., Fredslund, Jakob, Andersen, Gary L., Markowitz, Victor M. and Hugenholtz, Philip (2007) Automated group assignment in large phylogenetic trees using GRUNT: GRouping, ungrouping, naming tool. BMC Bioinformatics, 8 . doi:10.1186/1471-2105-8-402 78   5 Cited 4 times in Scopus4 0
Chivian, Dylan, Brodie, Eoin L., Alm, Eric J., Culley, David E., Dehal, Paramvir S., DeSantis, Todd Z., Gihring, Thomas M., Lapidus, Alla, Lin, Li-Hung, Lowry, Stephen R., Moser, Duane P., Richardson, Paul M., Southam, Gordon, Wanger, Greg, Pratt, Lisa M., Andersen, Gary L., Hazen, Terry C., Brockman, Fred J., Arkin, Adam P. and Onstott, Tullis C. (2008) Environmental genomics reveals a single-species ecosystem deep within earth. Science, 322 5899: 275-278. doi:10.1126/science.1155495 28   119 Cited 123 times in Scopus123 59
Werner, Jeffrey J., Koren, Omry, Hugenholtz, Philip, DeSantis, Todd Z., Walters, William A., Caporaso, J. Gregory, Angenent, Largus T., Knight, Rob and Ley, Ruth E (2012) Impact of training sets on classification of high-throughput bacterial 16s rRNA gene surveys. ISME Journal, 6 1: 94-103. doi:10.1038/ismej.2011.82 80   66 Cited 69 times in Scopus69 1