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McDonald, Daniel, Price, Morgan N., Goodrich, Julia, Nawrocki, Eric P., DeSantis, Todd Z, Probst, Alexander, Andersen, Gary L, Knight, Rob and Hugenholtz, Philip (2012) An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea. ISME Journal, 6 3: 610-618. doi:10.1038/ismej.2011.139 65   226 Cited 220 times in Scopus220 2
Wrighton, Kelly C., Agbo, Peter, Warnecke, Falk, Weber, Karrie A., Brodie, Eoin L., DeSantis, Todd Z., Hugenholtz, Philip, Andersen, Gary L. and Coates, John D. (2008) A novel ecological role of the Firmicutes identified in thermophilic microbial fuel cells. The ISME Journal, 2 11: 1146-1156. doi:10.1038/ismej.2008.48 38   76 Cited 82 times in Scopus82 0
Dalevi, Daniel, DeSantis, Todd Z., Fredslund, Jakob, Andersen, Gary L., Markowitz, Victor M. and Hugenholtz, Philip (2007) Automated group assignment in large phylogenetic trees using GRUNT: GRouping, ungrouping, naming tool. BMC Bioinformatics, 8 . doi:10.1186/1471-2105-8-402 75   4 Cited 4 times in Scopus4 0
Chivian, Dylan, Brodie, Eoin L., Alm, Eric J., Culley, David E., Dehal, Paramvir S., DeSantis, Todd Z., Gihring, Thomas M., Lapidus, Alla, Lin, Li-Hung, Lowry, Stephen R., Moser, Duane P., Richardson, Paul M., Southam, Gordon, Wanger, Greg, Pratt, Lisa M., Andersen, Gary L., Hazen, Terry C., Brockman, Fred J., Arkin, Adam P. and Onstott, Tullis C. (2008) Environmental genomics reveals a single-species ecosystem deep within earth. Science, 322 5899: 275-278. doi:10.1126/science.1155495 25   115 Cited 117 times in Scopus117 59
Werner, Jeffrey J., Koren, Omry, Hugenholtz, Philip, DeSantis, Todd Z., Walters, William A., Caporaso, J. Gregory, Angenent, Largus T., Knight, Rob and Ley, Ruth E (2012) Impact of training sets on classification of high-throughput bacterial 16s rRNA gene surveys. ISME Journal, 6 1: 94-103. doi:10.1038/ismej.2011.82 77   54 Cited 56 times in Scopus56 1