List of Records in Centre for Marine Studies Publications - UQ eSpace

A Call to Action for Coral Reefs

2009-04-14T17:42:12Z

A comparative ultrastructural study of spermatozoa of the teiid lizards Cnemidophorus gularis gularis, Cnemidophorus ocellifer, and Kentropyx altamazonica (Reptilia, Squamata, Teiidae)

2007-08-14T17:27:03Z

The ultrastructure of the spermatozoa of Cnemidophorus gularis gularis, Cnemidophorus ocellifer, and Kentropyx altamazonica is described for the first time. Mature spermatozoa of Cnemidophorus spp. and K. altamazonica differ in the occurrence of a perforatorial base plate, the enlargement of axonemal fibers 3 and 8, and shape of mitochondria. The comparisons of the ultrastructure sperm of Cnemidophorus spp. and K. altamazonica with Ameiva ameiva [J. Morphol. (2002) in press] suggest that Ameiva and Cnemidophorus are more similar to each other than either is to Kentropyx. Statistical analyses reveal that sperm of all three species studied are significantly different in the following dimensions: head, acrosome, distal centriole length, and nuclear shoulders width. There was no variable statistically different between the Cnemidophorus spp. only. The length of the tail, midpiece, entire sperm, and nuclear rostrum are significantly different between K. altamazonica and Cnemidophorus spp. Our results indicate that sperm ultrastructure presents intra and intergeneric variability. (C) 2002 Elsevier Science Ltd. All rights reserved.

A Conceptual Model of Impacts of Environmental Change on Human Well-Being

2004-09-17T00:00:00Z

Human well-being is dependent on goods and services provided by well-functioning ecosystems. Changes in ecosystem status and integrity can therefore impact directly and indirectly on human well-being. However, neither current measures of ecosystem health nor methods to value ecosystem services incorporate methods to assess impacts of changes in ecosystem health on human well-being. Assessment of these impacts is potentially useful in improving the sustainability of coastal management decision making. This paper presents a conceptual model developed to identify the potential links between ecosystem condition and human well-being. Based on existing literature, it is hypothesised that changes in coastal ecosystem condition may affect aspects of social and community relations through affecting people's sense of place, degree of involvement in the community and the extent to which they undertake recreation in the coastal environment. Changes in these aspects of social relations can have flow-on impacts on social capital, social networks, levels of trust and physical and mental health. Changes in ecosystem condition may also have more direct impacts on human health, through bacterial contamination of recreational waters, the presence of toxicants in seafood, or through the presence of toxic algal blooms in recreational waters. Regional economic production is also affected by changes in coastal ecosystems, through changes in the production of fishing, aquaculture and tourism industries. The conceptual model provides a basis for the development of a dynamic systems model to assess the impacts of changes in ecosystem health on human well-being. This information is necessary to ensure that decisions regarding the use of natural ecosystems are well-informed and therefore appropriate.

A conceptual model of impacts of environmental change on human well-being: Assessing the Social Economic impacts of change in coastal ecosystems

2007-08-24T12:54:53Z

A coral-specific primer for PCR amplification of the internal transcribed spacer region in ribosomal DNA

2007-08-13T10:33:29Z

Acquisition of symbiotic dinoflagellates (Symbiodinium) by juveniles of the coral Acropora longicyathus

2008-05-04T21:23:46Z

Scleractinian corals may acquire Symbiodinium from their parents (vertically) or from the environment (horizontally). In the present study, adult colonies of the coral Acropora longicyathus from One Tree Island (OTI) on the southern Great Barrier Reef (Australia) acquired two distinct varieties of symbiotic dinoflagellates (Symbiodinium) from the environment. Adult colonies had either Symbiodinium from clade C (86.7%) or clade A (5.3%), or a mixture of both clades A and C (8.0% of all colonies). In contrast, all 10-day-old juveniles were associated with Symbiodinium from clade A, while 83-day-old colonies contained clades A, C and D even though they were growing at the same location. Symbiodinium from clade A were dominant in both 10- and 83-day-old juveniles (99 and 97% of all recruits, respectively), while clade D was also found in 31% of 83-day-old juveniles. Experimental manipulation also revealed that parental association (with clade A or C), or the location within the OTI reef, did not influence which clade of symbiont was acquired by juvenile corals. The differences between the genetic identity of populations of Symbiodinium resident in juveniles and adult A. longicyathus suggest that ontogenetic changes in the symbiosis may occur during the development of scleractinian corals. Whether or not these changes are due to host selective processes or differences in the physical environment associated with juvenile versus adult colonies remains to be determined.

Adaptive management and its role in managing Great Barrier Reef water quality

2007-08-15T07:39:50Z

Adaptive management is the pathway to effective conservation, use and management of Australia’s coastal catchments and waterways. While the concepts of adaptive management are not new, applications involving both assessment and management responses are indeed limited at the national and regional scales. This paper outlines the components of a systematic framework for linking scientific knowledge, existing tools, planning approaches and participatory processes to achieve healthy regional partnerships between community, industry, government agencies and science providers to overcome institutional barriers and uncoordinated monitoring. The framework developed by the Coastal CRC (www.coastal.crc.org.au/amf/amf_index.htm) is hierarchical in the way it displays information to allow associated frameworks to be integrated, and represents a construct in which processes, information, decision tools and outcomes are brought together in a structured and transparent way for adaptive catchment and coastal management. This paper proposes how an adaptive management approach could be used to benefit the implementation of the Reef Water Quality Protection Plan (RWQPP).

Adaptive variation in coral geometry and the optimization of internal colony light climates

2007-09-19T19:00:08Z

1. The ability of photosynthetic organisms to adjust their light climate has high adaptive significance because irradiance can vary spatially by orders of magnitude. Using a plating (foliaceous) coral species (Turbinaria mesenterina), we tested the hypothesis that plasticity of colony geometry optimizes internal irradiance distributions. 2. We developed a two-dimensional model to predict the internal irradiance distribution of a foliaceous colony as a function of its geometry. Field tests showed that the model explained 85% of the variation in irradiance within colonies of T. mesenterina with minimal bias. 3. Colony plate angle, plate spacing and range of tissue distributions into the colony were exponential functions of water depth. In shallow water plates tended to be nearly vertical, narrowly spaced, and had living tissue only near the growing edge of the plate. In deep water plates grew more horizontally, were more widely spaced, and had living tissue extending well into the colony interior. This pattern of phenotypic plasticity effectively evens out differences in within-colony irradiances. 4. We compared within-colony irradiance distributions across light habitats (depth), based on the observed variation in colony geometry with water depth. Despite fourfold differences in environmental irradiance, within-colony irradiances had a common mode of 100-200 mu mol m(-2) s(-1). This is near the hypothesized photosynthetic optimum defined by the upper limit of the subsaturation parameter (E-k) of the photosynthesis-irradiance curve. 5. Our study demonstrates that phenotypic plasticity of colony geometry is an important mechanism for regulating light capture during growth in T. mesenterina, and facilitates near-optimal internal irradiances across a wide range of environmental light regimes.

A Decision Environment: Going Beyond a Decision Framework to Improve the Effectiveness of Decision Making in Natural Resource Management Vol 4

2007-08-24T00:35:27Z

Advances and limitations of Individual-based models to analyze and predict dynamics of mangrove forests. A review

2008-07-14T16:43:04Z

Mangrove ecosystems are considered vulnerable to climate change as coastal development limits the ecosystem services and adaptations important to their survival. Although they appear rather simple in terms of species diversity, their ecology is complex due to interacting geophysical forces of tides, surface runoff, river and groundwater discharge, waves, and constituents of sediment, nutrients and saltwater. These interactions limit developing a comprehensive framework for science-based sustainable management practices. A suite of models have been developed independently by various academic and government institutions worldwide to understand the dynamics of mangrove ecosystems and to provide ecological forecasting capabilities under different management scenarios and natural disturbance regimes. The models have progressed from statistical tables representing growth and yield to more sophisticated models describing various system components and processes. Among these models are three individual-based models (IBMs) (FORMAN, KIWI, and MANGRO). A comparison of models’ designs reveal differences in the details of process description, particularly, regarding neighbor competition among trees. Each model has thus its speciﬁc range of applications. Whereas FORMAN and KIWI are most suitable to address mangrove forest dynamics of stands, MANGRO focuses on landscape dynamics on larger spatial scale. A comparison of the models and a comparison of the models with empirical knowledge further reveal the general needs for further ﬁeld and validation studies to advance our ecological understanding and management of mangrove wetlands.

Adverse feedback sequences in exploited marine systems: are deliberate interruptive actions warranted?

Bakun, A. og Weeks, S. J. — 2007-08-15T08:23:50Z

Several mechanisms for self-enhancing feedback instabilities in marine ecosystems are identified and briefly elaborated. It appears that adverse phases of operation may be abruptly triggered by explosive breakouts in abundance of one or more previously suppressed populations. Moreover, an evident capacity of marine organisms to accomplish extensive geographic habitat expansions may expand and perpetuate a breakout event. This set of conceptual elements provides a framework for interpretation of a sequence of events that has occurred in the Northern Benguela Current Large Marine Ecosystem (off south-western Africa). This history can illustrate how multiple feedback loops might interact with one another in unanticipated and quite malignant ways, leading not only to collapse of customary resource stocks but also to degradation of the ecosystem to such an extent that disruption of customary goods and services may go beyond fisheries alone to adversely affect other major global ecosystem concerns (e.g. proliferations of jellyfish and other slimy, stingy, toxic and/or noxious organisms, perhaps even climate change itself, etc.). The wisdom of management interventions designed to interrupt an adverse mode of feedback operation is pondered. Research pathways are proposed that may lead to improved insights needed: (i) to avoid potential 'triggers' that might set adverse phases of feedback loop operation into motion; and (ii) to diagnose and properly evaluate plausible actions to reverse adverse phases of feedback operation that might already have been set in motion. These pathways include the drawing of inferences from available 'quasi-experiments' produced either by short-term climatic variation or inadvertently in the course of biased exploitation practices, and inter-regional applications of the comparative method of science.

Aerial exposure influences bleaching patterns

2007-08-15T08:23:52Z

Aerosol dispersal of the fish pathogen, Amyloodinium ocellatum

2007-08-15T08:23:54Z

Amyloodinium ocellatum, a frequently encountered parasite in marine aquaculture, was investigated to determine if infective dinospore stages could be transported in aerosol droplets. We used an in vivo model incorporating static and dynamic airflow systems and found dinospores of A. ocellatum could travel in aerosol droplets (up to 440 turn in a static system and up to 3 m in a dynamic one). This is the first record of this transmission pathway for a marine protozoan parasite. It is possible that other marine protozoans can transfer via the aerobiological pathway. Management of A. ocellatum infections in aquaculture facilities could be affected, particularly where tanks and ponds are situated in close proximity. (c) 2006 Elsevier B.V. All rights reserved.

A fossil reef from the last interglacial, Western Australia

2007-08-15T07:48:14Z

Age accuracy and resolution of Quaternary corals used as proxies for sea level

2008-02-18T16:18:05Z

The accuracy of global eustatic sea level curves measured from raised Quaternary reefs, using radiometric ages of corals at known heights, may be limited by time-averaging, which affects the variation in coral age at a given height. Time-averaging was assessed in uplifted Holocene reef sequences from the Huon Peninsula, Papua New Guinea, using radiocarbon dating of coral skeletons in both horizontal transects and vertical sequences. Calibrated 2 sigma age ranges varied from 800 to 1060 years along horizontal transects, but weighted mean ages calculated from 15-18 dates per horizon were accurate to a resolution within 154-214 yr. Approximately 40% of the variability in age estimate resulted from internal variability inherent to C-14 estimates, and 60% was due to time-averaging. The accuracy of age estimates of sea level change in studies using single dated corals as proxies for sea level is probably within 1000 yr of actual age, but can be resolved to <= 250 yr if supported by dates from analysis of a statistical population of corals at each stratigraphic interval. The range of time-averaging among reef corals was much less than that for shelly benthos. Ecological time-averaging dominated over sedimentological time averaging for reef corals, opposite to patterns reported from shelly benthos in siliciclastic environments. (c) 2006 Elsevier B.V. All rights reserved.

Agrobacterium rhizogenes-Mediated Transformation of Medicinal Plants from the Family Rhamnaceae

Rosic, N. — 2008-05-05T23:28:20Z

Allozyme electrophoresis still represents a powerful technique in the management of coral reefs

Ridgway, T. — 2007-08-15T07:46:40Z

Understanding genetic variability and gene flow between populations of scleractinian corals separated by one to several hundred kilometers is crucially important as we head into a century of climate change in which an understanding of the connectivity of populations is a critically important question in management. Genetic methods that directly use molecular variance in the DNA should offer greater precision in detecting differences among individuals and populations than the more traditional allozyme electrophoresis. However, this paper highlights the point that the limited number of DNA markers that have been identified for scleractinian coral genetic studies do not necessarily offer greater precision than that offered by allozymes. In fact, at present allozyme electrophoresis yields greater information than the eight different DNA markers used in this study. Given the relative ease of use of allozymes and the wealth of comparable data sets from numerous previously published studies, allozyme electrophoresis should not be dismissed for population structure and connectivity studies on coral reefs. While continued effort should be placed into searching for new DNA markers, until a more sensitive DNA marker becomes available for scleractinian corals, allozyme electrophoresis remains a powerful and relevant technique for understanding the connectivity of coral population studies.

All-protein Chromophores Isolated from Corals, Quench Superoxide Radicals

2009-02-06T15:05:06Z

A low-latitude bloom of the surf-zone diatom, Anaulus australis (Centrales, Bacillariophyta) on the coast of Southern Queensland (Australia)

Hewson, I. og Oneil, J. M. og Abal, E. — 2007-08-14T16:31:30Z

A novel bloom of the surf diatom Anaulus australis Drebes et Schultz was observed in subtropical waters off Surfers' Paradise, Queensland, Australia (27 degrees 55'S; 153 degrees 23'E) in early May 2000. This is the lowest latitude in which an Anaulus australis surf diatom bloom has been reported. Nitrogen stable isotope analysis of surf diatoms may indicate anthropogenic nutrient inputs in this environment.

Amino acid availability determines the ratio of microcystin variants in the cyanobacterium Planktothrix agardhii

2009-04-16T14:26:04Z

Amino acid residues in conodont elements

Kemp, A. R. — 2007-08-14T17:01:35Z

Thermally unaltered conodont elements, brachiopods. and vertebrates were analyzed with reverse phase high profile liquid chromatography to locate and quantify amino acid remnants of the original organic matrix in the fossils. No consistent similarities in amino acid content were found in conodont taxa. and criteria based on organic residues appear to have no taxonomic significance in the fossils tested from these localities. However, hydroxyproline. an amino acid that is found in the collagen molecules of animals. as well as in the glycoproteins in the cell walls and reproductive tissues of certain plants, is represented in most taxa. The organic matter retained in the impermeable crowns of conodont elements might have been derived originally from a form of collagen. Biochemical analyses. correlated with histochemical tests, demonstrate that organic matter is an integral part of the hyaline tissue of the element crown and not the result of surface contamination. Tests of a range of vertebrate and invertebrate fossil hard tissues produced similar results. The analyses indicate that hyaline tissue in the conodont element crown is not a form of vertebrate enamel. which contains no collagen. Albid tissue. with little or no organic content. is not a form of vertebrate bone or dentine, both based on collagen and low in mineral. Although these results do not help to determine the phylogenetic affinities of conodont animals, they indicate teat conodont elements do not contain hard tissues characteristic of vertebrate animals.

Amino acid substitutions around the chromophore of the chromoprotein Rtms5 influence polypeptide cleavage

2007-08-15T08:24:25Z

Extension of the conjugated pi-system of many all-protein chromophores with an acylimine bond is the basis for their red-shifted optical properties. The presence of this post-translational modification is evident in crystal structures of these proteins. Harsh denaturation of proteins containing an acylimine bond results in partial polypeptide cleavage. For the red fluorescent protein DsRed, the extent of cleavage is quantitative. However, this is not the case for the blue non-fluorescent chromoprotein Rtms5, even though all chromophores in tetrameric Rtms5 contain an acylimine bond. We have identified two positions around the chromophore of Rtms5 where substitutions can promote or suppress the extent of cleavage on harsh denaturation. We propose a model in which cleavage of Rtms5 is facilitated by a trans to cis isomerisation of the chromophore. (c) 2006 Elsevier Inc. All rights reserved.

Amino acid synthesis in the symbiotic sea anemone Aiptasia pulchella

Swanson, R. og Hoegh-Guldberg, O. — 2007-08-13T10:27:14Z

Symbiotic Aiptasia pulchella and freshly isolated zooxanthellae were incubated in (NaHCO3)-C-14 and NH4Cl for 1 to 240 min, and samples were analysed by reverse-phase high-performance liquid chromatography (HPLC) and an online radiochemical detector. NH4+ was first assimilated into C-14-glutamate and C-14-glutamine in the zooxanthellae residing in A. pulchella. The specific activities (dpm nmol(-1)) of C-14-glutamate and C-14-glutamine in vivo, were far greater in the zooxanthellae than in the host tissue, indicating that NH4+ was principally incorporated into the glutamate and glutamine pools of the zooxanthellae. C-14-alpha-ketoglutarate was taken up from the medium by intact A. pulchella and assimilated into a small amount of C-14-glutamate in the host tissue, but no C-14-glutamine was detected in the host fraction. The C-14-glutamate that was synthesized was most likely produced from transamination reactions as opposed to the direct assimilation of NH4+. The free aminoacid composition of the host tissue and zooxanthellae of A. pulchella was also measured. The results presented here demonstrate that NH4+ was initially assimilated by the zooxanthellae of A. pulchella.

Ampullary organ morphology of freshwater salmontail catfish Arius graeffei

2008-06-10T12:49:59Z

Analysis of an EST library from the dinoflagellate (Symbiodinium sp.) symbiont of reef-building corals

2008-05-04T22:37:55Z

Dinoflagellates (Symbiodinium sp. Freud.) are an obligatory endosymbiont of the reef-building corals. Recent changes to the environment surrounding coral reefs (e.g., global warming) have demonstrated that this endosymbiotic relationship between corals and Symbiodinium is particularly sensitive to environmental changes. Therefore, understanding gene expression patterns of Symbiodinium is critical to understanding why coral reefs are susceptible to global climate change. This study identified 1456 unique expression sequence tags (ESTs) generated for Symbiodinium (clade C3) from the staghorn coral Acropora aspera following exposure to a variety of stresses. Of these, only 10% matched previously reported dinoflagellate ESTs, suggesting that the conditions used in the construction of the library resulted in a novel transcriptome. The function of 561 (44%) of these ESTs could be identified. The majority of these genes coded for proteins involved in posttranslational modification, protein turnover, and chaperones (12.3%); energy production and conversion (12%); or an unknown function (18.6%). The most common transcript found was a homologue to a bacterial protein of unknown function. This algal protein is targeted to the chloroplast and is present in those phototrophs that acquired plastids from the red algal lineage. An additional 48 prokaryote-like proteins were also identified, including the first glycerol-phosphate:phosphate antiporter from dinoflagellates. A protein with similarity to the fungi-archael-bacterial heme catalase peroxidases was also found. A variety of stress genes, in particular heat-shock proteins and proteins involved in ubiquitin cascades, were also identified. This study is the first transcriptome from the unicellular component of a eukaryote-eukaryote symbiosis.

Analytical approach for selecting normalizing genes from a cDNA microarray platform to be used in q-RT-PCR assays: A cnidarian case study

2009-04-16T10:09:23Z

An ancient and variable mannose-binding lectin from the coral Acropora millepora binds both pathogens and symbionts

2009-04-15T14:49:16Z

An assessment of carbon dioxide gassing as a sampling technique for studies of the nexton of soft-sediment intertidal pools

Kwik, J. og Tibbetts, I. R. — 2008-06-10T12:50:09Z

Anatomy of a hemiramphid pharyngeal mill with reference to Arrhamphus sclerolepis krefftii (Steindachner) (Teleostei : hemiramphidae)

Tibbetts, I. R. og Carseldine, L. — 2007-08-15T02:42:57Z

The structure and function of the pharyngeal jaw apparatus (PJA) and postpharyngeal alimentary tract of Arrhamphus sclerolepis krefftii, an herbivorous hemiramphid, were investigated by dissection, light and scanning electron microscopy, and X-ray analysis of live specimens. A simple model of PJA operation is proposed, consisting of an adductive power stroke of the third pharyngobranchial that draws it posteriorly while the fifth ceratobranchial is adducted, and a return stroke in which the third pharyngobranchial bone is drawn anteriorly during abduction of the fifth ceratobranchial. Teeth in the posteromedial region of the PJA are eroded into an occlusion zone where the teeth of the third pharyngobranchial are spatulate incisiform and face posteriorly in opposition to the rostrally oriented spatulate incisiform teeth in the wear zone of the fifth ceratobranchial. The shape of the teeth and their pedestals (bone of attachment) is consistent with the model and with the forces likely to operate on the elements of the PJA during mastication. The role of pharyngeal tooth replacement in maintaining the occlusal surfaces in the PJA during growth is described. The postpharyngeal alimentary tract of A. sclerolepis krefftii comprises a stomachless cylinder that attenuates gradually as it passes straight to the anus, interrupted only by a rectal valve. The ratio of gut length to standard length is about 0.5. Despite superficial similarities to the cichlid PJA (Stiassny and Jensen [1987] Bull Mus Comp Zool 151: 269-319), the hemiramphid PJA differs in the fusion of the third pharyngobranchial bones, teeth in the second pharyngobranchials and the fifth ceratobranchial face anteriorly, the presence of a slide-like diarthroses between the heads of the fourth epibranchials and the third pharyngobranchial, the occlusion zone of constantly wearing teeth, and the unusual form of the muscularis craniopharyngobranchialis. The functional relationship between these structures is explained and the consequence for the fish of a complex PJA and a simple gut is discussed. (C) 2002 Wiley-Liss, Inc.

Anatomy of the pharyngeal jaw apparatus of Zenarchopterus (Gill) (Teleostei : Beloniformes)

Tibbetts, I. R. og Carseldine, L. — 2007-08-15T04:49:32Z

The structure of the pharyngeal jaw apparatus (PJA) of Zenarchopterus dispar and Z. buffonis, carnivorous estuarine and freshwater West-Pacific halfbeaks, was investigated using dissection, light, and scanning electron microscopy as part of a comparison with estuarine and marine herbivorous confamilials. The Zenarchopterus PJA differs from published descriptions of hemiramphid PJAs in that the otic capsules are less pronounced; the pharyngocranial articulation facet is trough-like; the third pharyngobranchials are ankylosed; the second pharyngobranchial anterior processes are relatively hypotrophied; all pharyngeal teeth except the posterior teeth in the fifth ceratobranchial face posteriorly; the muscularis craniopharyngobranchialis 2 posterior is short; the muscularis craniopharyngobranchialis 2 anterior is lacking, as is its insertion site, the inferior parasphenoid apophysis; the protractor pectoralis is well developed; the pharyngocleithralis internus originates dorsal to the level of the fifth ceratobranchial bony process; the fifth ceratobranchial bony processes are directed ventrolaterally; the opposing upper and lower tooth fields appear not to occlude erosively; and the muscular portion of the pharyngohyoideus is well developed anteriorly. The extent of these differences and their implications for the function of the PJA support recent molecular studies that suggest that the Hemiramphidae is polyphyletic. (C) 2004 Wiley-Liss, Inc.

Ancient reefs

Pandolfi, John M. — 2009-03-20T12:44:51Z

An Entangled Two Photon Source using Biexciton Emission of an Asymmetric Quantum Dot in a Cavity

2004-02-04T00:00:00Z

A semiconductor based scheme has been proposed for generating entangled photon pairs from the radiative decay of an electrically-pumped biexciton in a quantum dot. Symmetric dots produce polarisation entanglement, but experimentally-realised asymmetric dots produce photons entangled in both polarisation and frequency. In this work, we investigate the possibility of erasing the `which-path' information contained in the frequencies of the photons produced by asymmetric quantum dots to recover polarisation-entangled photons. We consider a biexciton with non-degenerate intermediate excitonic states in a leaky optical cavity with pairs of degenerate cavity modes close to the non-degenerate exciton transition frequencies. An open quantum system approach is used to compute the polarisation entanglement of the two-photon state after it escapes from the cavity, measured by the visibility of two-photon interference fringes. We explicitly relate the two-photon visibility to the degree of Bell-inequality violation, deriving a threshold at which Bell-inequality violations will be observed. Our results show that an ideal cavity will produce maximally polarisation-entangled photon pairs, and even a non-ideal cavity will produce partially entangled photon pairs capable of violating a Bell-inequality.

An evolutionary hypothesis for the radiation of the Gyliauchenidae Goto & Matsudaira, 1918 (Platyhelminthes: Digenea)

2008-06-06T15:58:39Z

A new, extinct pleistocene reef coral from the Montastraea ‘‘Annularis’’ species complex

Pandolfi, J. M. — 2008-02-18T17:07:17Z

A new species of the Montastraea "annularis" species complex is herein described from Pleistocene coral reefs of the Caribbean Sea. The species, Montastraea nancyi n. sp., had a broad geographic distribution at mainly insular sites 125 Ka. It has a fossil record extending from >600 Ka (thousand years) to 82 Ka, both first and last occurrences exclusively on the island of Barbados. It also had a broad environmental tolerance, occurring in fringing, windward back-reef and reef-crest, leeward reef-crest, and lagoonal patch-reef environments. In every habitat in which it lived, there are examples that it either dominated the coral fauna or shared dominance with Acropora palmata, a dominant shallow water coral in high-energy Pleistocene and modem reefs. The extinction of Montastraea nancyi resulted in evolutionary and ecological change in surviving members of the M. "annularis" species complex.

An Introduction to the Great Barrier Reef

2009-04-15T12:32:30Z

Antibody increases phagocytosis and killing of Lactococcus garvieae by rainbow trout (Oncorhynchus mykiss, L.) macrophages

2007-09-19T16:10:24Z

The present study reports that specific antibody increased the bactericidal activity of rainbow trout head-kidney macrophages against virulent capsulated Lactococcus garvieae in the absence of complement. The observed increased bactericidal activity appeared to result from increased phagocytosis of capsulated L. garvieae in the presence of specific antibody and may in part explain the protective effect of antibody previously reported against this disease. (C) 2002 Academic Press.

A photosynthetic alveolate closely related to apicomplexan parasites

2009-04-15T16:34:38Z

Apoptosis and autophagy as mechanisms of dinoflagellate symbiont release during cnidarian bleaching: every which way you lose

2009-04-14T18:28:47Z

Apoptosis and autophagy as mechanisms of dinoflagellate symbiont release during cnidarian bleaching: every which way you lose

2008-02-18T15:49:29Z

Cnidarian bleaching results from the breakdown in the symbiosis between the host cnidarian and its dinoflagellate symbiont. Coral bleaching in recent years has increasingly caused degradation and mortality of coral reefs on a global scale. Although much is understood about the environmental causes of bleaching, the underlying cellular mechanisms of symbiont release that drive the process are just beginning to be described. In this study, we investigated the roles of two cellular pathways, host cell apoptosis and autophagy, in the bleaching process of the symbiotic anemone Aiptasia pallida. Host cell apoptosis was experimentally manipulated using gene knockdown of an anemone caspase by RNA interference, chemical inhibition of caspase using ZVAD-fmk and an apoptosis-inducer wortmannin. Autophagy was manipulated by chemical inhibition using wortmannin or induction using rapamycin. The applications of multiple single treatments resulted in some increased bleaching in anemones under control conditions but no significant drop in bleaching in individuals subjected to a hyperthermic stress. These results indicated that no single pathway is responsible for symbiont release during bleaching. However, when multiple inhibitors were applied simultaneously to block both apoptosis and autophagy, there was a significant reduction in bleaching in heat-stressed anemones. Our results allow us to formulate a model for cellular processes involved in the control of cnidarian bleaching where apoptosis and autophagy act together in a see-saw mechanism such that if one is inhibited the other is induced. Similar interconnectivity between apoptosis and autophagy has previously been shown in vertebrates including involvement in an innate immune response to pathogens and parasites. This suggests that the bleaching response could be a modified immune response that recognizes and removes dysfunctional symbionts.

Apoptosis as a post-phagocytic winnowing mechanism in a coral-dinoflagellate mutualism

Dunn, S.R. og Weis, V.M. — 2009-04-14T18:35:41Z

Application of DNA parentage analyses for determining relative growth rates of Penaeus japonicus families reared in commercial ponds

2007-08-15T08:26:11Z

The ability to track large numbers of individuals and families is a key determinant of the power and precision of breeding programs, including the capacity to quantify interactions between genotypes and their environment. Until recently, most family based selective breeding programs for shrimp, and other highly fecund aquaculture species, have been restricted by the number of animals that can be physically tagged and individually selected. Advances in the development of molecular markers, such as microsatellite loci, are now providing the means to track large numbers of individuals and families in commercial production systems. In this study microsatellites, coupled with DNA parentage analyses, were used to determine the relative performance of 22 families of R japonicus reared in commercial production ponds. In the experimental design 6000 post-larvae from each of 22 families, whose maternal parents had been genotyped at 8 microsatellite loci, were stocked into each of four I ha ponds. After 6 months the ponds were harvested and a total of 6000 individuals were randomly weighed from each pond. Mean wet weight of the shrimp from one pond was significantly lower than that of the other three ponds demonstrating a possible pond effect on growth rate. The representation of families in the top 10% of each pond's weight distribution was then determined by randomly genotyping up to 300 individuals from this upper weight class. Parentage analyses based on individual genotypic data demonstrated that some families were over-represented in the top 10% in all ponds, while others were under-represented due to slower growth rates. The results also revealed some weak, but significant, male genotype x environment (G x E) interactions in the expression of shrimp growth for some families. This indicates that G x E effects may need to be factored into future R japonicus selective breeding programs. This study demonstrated the utility of DNA parentage analyses for tracking individual family performance in communally stocked shrimp pond populations and, its application to examining G x E effects on trait expression under commercial culture conditions. Crown Copyright (c) 2005 Published by Elsevier B.V. All rights reserved.

Aquaculture: Farming Aquatic Animals and Plants

2009-02-11T15:56:08Z

A range extension of Morethia ruficauda courtesy of a cat stomach

Palmer, R. — 2008-06-10T11:53:06Z

A record of high frog species diversity from the Mitchell grasslands of southwestern Queensland

Palmer, R. A. — 2007-08-14T16:18:31Z

Are infectious diseases really killing corals? Alternative interpretations of the experimental and ecological data

2008-02-18T17:27:28Z

Emerging infectious diseases are a worldwide problem and are believed to play a major role in coral reef degradation. The study of coral diseases is difficult but the use of culture-independent molecular techniques has been, and will continue to be, useful in a system where a limited number of visible signs are commonly used to define a "coral disease". We propose that coral "diseases", with rare exception, are opportunistic infections secondary to exposure to physiological stress (e.g. elevated temperature) that result in reduced host resistance and unchecked growth of bacteria normally benign and non-pathogenic. These bacteria are from the environment, the host, or the coral mucus layer and become opportunistic pathogens. While difficult and time consuming, we do not advocate abandoning the study of disease-causing pathogens in corals. However, these studies should include comprehensive efforts to better understand the relationship between coral diseases and environmental changes, largely anthropogenic in nature, occurring on coral reefs around the world. These environmental insults are the cause of the physiological stress that subsequently leads to coral mortality and morbidity by many mechanisms including overwhelming infections by opportunistic pathogens. (c) 2007 Published by Elsevier B.V.

Are US coral reefs on the slippery slope to slime?

2007-08-15T07:46:08Z

Conservation of U.S. coral reefs has been sidetracked by the partial implementation of management plans without clearly achievable goals. Historical ecology reveals global patterns of coral reef degradation that provide a framework for reversing reef decline with ecologically meaningful metrics for success. The authors of this Policy Forum urge action now to address multiple threats simultaneously, because the harmful effects of stressors like overfishing, pollution, poor land-use practices, and global warming are interdependent. Prompt implementation of proven, practical solutions would lead to both short- and long-term benefits, including the return of keystone species and the economic benefits they entail.

A review of feeding preference and deterrence in three faunal species associated with cyanobacterial blooms of Lyngbya majuscula in southeast Queensland, Australia

2007-08-23T19:30:18Z

A review of the Indo-Pacific Lioconcha Morch (Mollusca: Bivalvia: Veneridae). Including a description of four species from Queensland, New Caledonia and the Phillipine Islands

Lamprell, K. L. og Healy, J. M. — 2007-08-14T19:03:43Z

A scoping and consensus building model of a toxic blue-green algae bloom

Arquitt, S. P. og Johnstone, R. W. — 2007-08-15T04:50:15Z

A segmentation-based and partial volume compensated method for accurate measurement of lateral ventricular volumes on TI-weighted magnetic resonance images

2008-06-06T15:00:35Z