Institute for Molecular Bioscience - Publications

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Young, N. and Koopman, P. (2007). Sox genes at the heart of endothelial transcription. In William C. Aird (Ed.), Endothelial Biomedicine (pp. 861-867) Cambridge: Cambridge University Press. 40  
Lê Cao, Kim-Anh, Martin, Pascal G. P., Robert-Granié, Christèle and Besse, Philippe (2009) Sparse canonical methods for biological data integration: application to a cross-platform study. BMC Bioinformatics, 10 Article# 34: 1-17. doi:10.1186/1471-2105-10-34 45   26 Cited 55 times in Scopus55 3
Lê Cao, Kim-Anh, Boitard, Simon and Besse, Philippe (2011) Sparse PLS discriminant analysis: biologically relevant feature selection and graphical displays for multiclass problems. Bmc Bioinformatics, 12 22: Article number 253. doi:10.1186/1471-2105-12-253 52   1 Cited 31 times in Scopus31 2
Mobli, Mehdi, Maciejewski, Mark W., Schuyler, Adam D., Stern, Alan S. and Hoch, Jeffrey C. (2012) Sparse sampling methods in multidimensional NMR. Physical Chemistry Chemical Physics, 14 31: 10835-10843. doi:10.1039/c2cp40174f 45   13 Cited 16 times in Scopus16 0
Caruana, Georgina, Cullen-McEwen, Luise, Nelson, Amy L., Kostoulias, Xenia, Woods, Kyra, Gardiner, Brooke, Davis, Melissa J., Taylor, Darrin F., Teasdale, Rohan D., Grimmond, Sean M., Little, Melissa H. and Bertram, John F. (2006) Spatial gene expression in the T-stage mouse metanephros. Gene Expression Patterns, 6 8: 807-825. doi:10.1016/j.modgep.2006.02.001 109   19 Cited 22 times in Scopus22 0
Bullejos, M. and Koopman, P. (2001) Spatially dynamic expression of Sry in mouse genital ridges. Developmental Dynamics, 221 2: 201-205. doi:10.1002/dvdy.1134 54   132 Cited 137 times in Scopus137 0
Ferrari, Mariana L., Gomez, Guillermo A. and Maccioni, Hugo J. F. (2012) Spatial organization and stoichiometry of N-terminal domain-mediated glycosyltransferase complexes in Golgi membranes determined by fret microscopy. Neurochemical Research, 37 6: 1325-1334. doi:10.1007/s11064-012-0741-1 26 1 2 Cited 2 times in Scopus2 0
Martin, S, Okano, S, Kistler, C, Fernandez-Rojo, M. A., Hill, M. M. and Parton, R. G. (2009) Spatiotemporal regulation of early lipolytic signaling in adipocytes. Journal of Biologicial Chemistry, 284 46: 32097-32107. doi:10.1074/jbc.M109.002675 70   16 Cited 16 times in Scopus16 0
Kent, Stephen and Alewood, Paul (2007) Special issue - Tribute to Bruce Merrifield. International Journal of Peptide Research And Therapeutics, 13 1-2: 29-29. doi:10.1007/s10989-006-9051-2 36   0 0
Fry, B. G., Wickramaratna, J. C., Jones, A., Alewood, P. F. and Hodgson, W. C. (2001) Species and regional variations in the effectiveness of antivenom against the in Vitro neurotoxicity of death adder (Acanthophis) venoms. Toxicology And Applied Pharmacology, 175 2: 140-148. doi:10.1006/taap.2001.9233 96   31 Cited 32 times in Scopus32 0
Mureev, Sergei, Kovtun, Oleksiy, Nguyen, Uyen T. T. and Alexandrov, Kirill (2009) Species-independent translational leaders facilitate cell-free expression. Nature Biotechnology, 27 8: 747-752. doi:10.1038/nbt.1556 77   48 Cited 49 times in Scopus49 0
Perkins, Andrew C., Papathanasiou, Peter, Goodnow, Christopher C. and Keys, Janelle R. (2005). Specific activation of human beta-Globin gene expression by the transcription factor Ikaros. In: Blood. Proceedings of: ASH Annual Meeting Abstracts. 47th ASH Annual Meeting, Atlanta, GA, USA, (1013A-1014A). 10-13 December 2005. 93   Cited 0 times in Scopus0
Ripoll, V. M., Hume, D. A. and Fontanilla, M.R. (2005) Specific expression of inflammatory genes in macrophage subpopulations. Biomedica, 25 2: 261-270. 23   Cited 0 times in Scopus0
Mercer, T. R., Dinger, M. E., Sunkin, S. M., Mehler, M. F. and Mattick, J. S. (2008) Specific expression of long noncoding RNAs in the mouse brain. Proceedings of the National Academy of Sciences of the United States of America, 105 2: 716-721. doi:10.1073/pnas.0706729105 66   327 Cited 342 times in Scopus342 15
Rebaud, Samuel, Wang, Conan K., Sarkis, Joe, Mason, Lyndel, Simon, Anne, Blum, Loic J., Hofmann, Andreas and Girard-Egrot, Agnes P. (2014) Specific interaction to PIP2 increases the kinetic rate of membrane binding of VILIPs, a subfamily of Neuronal Calcium Sensors (NCS) proteins. Biochimica et Biophysica Acta - Biomembranes, 1838 10: 2698-2707. doi:10.1016/j.bbamem.2014.06.021 17   0 Cited 0 times in Scopus0 0
Heimann, K. R., Percival, J. M., Weinberger, R., Gunning, P. and Stow, J. L. (1999) Specific isoforms of actin-binding proteins on distinct populations of Golgi-derived vesicles. Journal of Biological Chemistry, 274 16: 10743-10750. doi:10.1074/jbc.274.16.10743 53   78 Cited 84 times in Scopus84 3
Mobli, Mehdi, Stern, Alan S. and Hoch, Jeffrey C. (2006) Spectral reconstruction methods in fast NMR: Reduced dimensionality, random sampling and maximum entropy. Journal of magnetic resonance, 182 1: 96-105. doi:10.1016/j.jmr.2006.06.007 61   42 Cited 47 times in Scopus47 0
Zhang, L., Crossley, M. J., Dixon, N. E., Ellis, P. J., Fisher, M. L., King, G. F., Lilley, P. E., MacLachlan, D., Pace, R. J. and Freeman, H. C. (1998) Spectroscopic identification of a dinuclear metal centre in manganese(II)-activated aminopeptidase P from Escherichia coli: implications for human prolidase. Journal of Biological Inorganic Chemistry, 3 5: 470-483. doi:10.1007/s007750050257 90   34 Cited 36 times in Scopus36 0
Ng, Shu-Kay and McLachlan, Geoffrey J. (2004) Speeding up the EM algorithm for mixture model-based segmentation of magnetic resonance images. Pattern Recognition, 37 8: 1573-1589. doi:10.1016/j.patcog.2004.02.012 81   15 Cited 16 times in Scopus16 0
Traini, Mathew, Quinn, Carmel M., Sandoval, Cecilia, Johansson, Erik, Schroder, Kate, Kockx, Maaike, Meikle, Peter J., Jessup, Wendy and Kritharides, Leonard (2014) Sphingomyelin phosphodiesterase Acid-like 3A (SMPDL3A) is a novel nucleotide phosphodiesterase regulated by cholesterol in human macrophages. Journal of Biological Chemistry, 289 47: 32895-32913. doi:10.1074/jbc.M114.612341 7   0 Cited 0 times in Scopus0 0
Maggio, F., Sollod, B. L., Tedford, H. W. and King, G. F. (2010). Spider toxins and their potential for insect control. In Lawrence I. Gilbert and Sarjeet S. Gill (Ed.), Insect pharmacology: Channels, receptors, toxins and enzymes (pp. 101-118) London, U.K.: Academic Press. 95 2
Maggio, F., Sollod, B. L., Tedford, H. W. and King, G. F. (2005). Spider toxins and their potential for insect control. In L. I. Gilbert, K. Iatrou and S. S. Gill (Ed.), Comprehensive molecular insect science (pp. 221-238) Amsterdam, Netherlands: Elsevier. doi:10.1016/B0-44-451924-6/00094-6 201   0
Pineda, Sandy S., Undheim, Eivind A. B., Rupasinghe, Darshani B., Ikonomopoulou, Maria P. and King, Glenn F. (2014) Spider venomics: implications for drug discovery. Future Medicinal Chemistry, 6 15: 1699-1714. doi:10.4155/FMC.14.103 13   1 Cited 1 times in Scopus1 1
Seaz, Natalie J., Senff, Sebastian, Jensen, Jonas E., Er, Sing Yan, Herzig, Volker, Rash, Lachlan D. and King, Glenn F. (2010) Spider-venom peptides as therapeutics. Toxins, 2 12: 2851-2871. doi:10.3390/toxins2122851 118   55 Cited 54 times in Scopus54 1
King, Glenn F. and Hardy, Margaret C. (2013) Spider-venom peptides: structure, pharmacology, and potential for control of insect pests. Annual Review of Entomology, 58 475-496. doi:10.1146/annurev-ento-120811-153650 109   46 Cited 50 times in Scopus50 15
Klint, Julie, Anangi, Raveendra, Mobli, Mehdi, Knapp, Oliver, Adams, David J. and King, Glenn F. (2012). Spider-venom peptides that target the human NaV1.7 channel: Potential analgesics for the treatment of chronic pain. In: Abstracts: Toxins 2012. 7th World Congress of the International Society on Toxinology & Venom Week 2012, 4th International Scientific Symposium on All Things Venomous, Honolulu, Hawaii, (110-111). 8 - 13 July 2012. doi:10.1016/j.toxicon.2012.04.032 72   0 0
Jayamanne, A., Jeong, H. J., Schroeder, C. I., Lewis, R. J., Christie, M. J. and Vaughan, C. W. (2013) Spinal actions of omega-conotoxins, CVID, MVIIA and related peptides in a rat neuropathic pain model. British Journal of Pharmacology, 170 2: 245-254. doi:10.1111/bph.12251 27   4 Cited 5 times in Scopus5 3
Zhang, Hua, Xiao, Xue, Conte, Melissa M., Khalil, Zeinab and Capon, Robert J. (2012) Spiralisones A-D: acylphloroglucinol hemiketals from an Australian marine brown alga, Zonaria spiralis. Organic and Biomolecular Chemistry, 10 48: 9671-9676. doi:10.1039/c2ob26988k 27   4 Cited 5 times in Scopus5 0
Frith, M. C., Carninci, P., Kai, C., Kawai, J., Bailey, T. L., Hayashizaki, Y. and Mattick, J. S. (2007) Splicing bypasses 3' end formation signals to allow complex gene architectures. Gene, 403 1-2: 188-193. doi:10.1016/j.gene.2007.08.012 55   5 Cited 5 times in Scopus5 0
Capon, Robert J., Singh, Sachin, Ali, Sadaquat and Sotheeswaran, Subramaniam (2005) Spongosoritin A: A new polyketide from a Fijian marine sponge, Spongosorites sp.. Australian Journal Of Chemistry, 58 1: 18-20. doi:10.1071/CH04234 82   5 Cited 3 times in Scopus3 0
Pinzon-Charry, Alberto, Maxwell, Tammy, McGuckin, Michael A., Schmidt, Chris, Furnival, Colin and Lopez, Jose A. (2006) Spontaneous apoptosis of blood dendritic cells in patients with breast cancer. Breast Cancer Research, 8 1: R5.1-R5.10. doi:10.1186/bcr1361 61   30 Cited 28 times in Scopus28 0
Ho, Christopher S. K., Munster, David, Pyke, Christopher M., Hart, Derek N. J. and Lopez, J. Alejandro (2002) Spontaneous generation and survival of blood dendritic cells in mononuclear cell culture without exogenous cytokines. Blood, 99 8: 2897-2904. doi:10.1182/blood.V99.8.2897 99   42 Cited 41 times in Scopus41 0
Funk, A., Hohenberg, H., Mhamdi, M., Will, H and Sirma, H. (2004) Spread of Hepatitis B Viruses In Vitro Requires Extracellular Progeny and May Be Codetermined by Polarized Egress. Journal of Virology, 78 8: 3977-3983. doi:10.1128/JVI.78.8.3977-3983.2004 31   14 Cited 15 times in Scopus15 0
Fry, Bryan G., Undheim, Eivind A. B., Ali, Syed A., Jackson, Timothy N. W., Debono, Jordan, Scheib, Holger, Ruder, Tim, Morgenstern, David, Cadwallader, Luke, Whitehead, Darryl, Nabuurs, Rob, van der Weerd, Louise, Vidal, Nicolas, Roelants, Kim, Hendrikx, Iwan, Gonzalez, Sandy Pineda, Koludarov, Ivan, Jones, Alun, King, Glenn F., Antunes, Agostinho and Sunagar, Kartik (2013) Squeezers and leaf-cutters: differential diversification and degeneration of the venom system in toxicoferan reptiles. Molecular and Cellular Proteomics, 12 7: 1881-1899. doi:10.1074/mcp.M112.023143 47   10 Cited 10 times in Scopus10 26
Weller, SG, Capitani, M, Cao, H, Micaroni, M, Luini, A, Sallese, M and McNiven, MA (2010) Src kinase regulates the integrity and function of the Golgi apparatus via activation of dynamin 2. Proceedings of the National Academy of Sciences of the United States of America, 107 13: 5863-5868. doi:10.1073/pnas.0915123107 34   33 Cited 37 times in Scopus37 0
Gross, J., Wajid, S., Price, D., Chan, C. X. and Bhattacharya, D. (2012). Srnas of cyanophora paradoxa and chlamydomonas reinhardtii, a system genomics approach to understand algal evolution. In: PSA 2012 Abstracts. Annual Meeting of the Phycological Society of America (PSA) 2012, Charleston SC, United States, (S20-S20). 20-23 June 2012. doi:10.1111/j.1529-8817.2012.01206.x 39   0 1
Koopman, P. A. (2001) SRY and DNA-bending proteins in (eds.) Encyclopedia of Life Sciences. 1st England: Nature Publishing Group 49  
Greenfield, A. and Koopman, P. (1996) SRY and mammalian sex determination. Current Topics in Developmental Biology, 34 1-23. doi:10.1016/S0070-2153(08)60707-3 19   26 0
Koopman, P (1999) Sry and Sox9: Mammalian testis-determining genes. Cellular and Molecular Life Sciences, 55 6-7: 839-856. doi:10.1007/PL00013200 65   112 Cited 124 times in Scopus124 0
Polanco, Juan Carlos and Koopman, Peter (2007) Sry and the hesitant beginnings of male development. Developmental Biology, 302 1: 13-24. doi:10.1016/j.ydbio.2006.08.049 69   50 Cited 54 times in Scopus54 12
Zhao, Liang and Koopman, Peter (2012) SRY protein function in sex determination: Thinking outside the box. Chromosome Research, 20 1: 153-162. doi:10.1007/s10577-011-9256-x 41   7 Cited 6 times in Scopus6 0
Bowles, Josephine, Cooper, Leanne, Berkman, Jennifer and Koopman, Peter (1999) Sry requires a CAG repeat domain for male sex determination in Mus musculus. Nature Genetics, 22 4: 405-408. doi:10.1038/11981 75   92 Cited 95 times in Scopus95 0
Koopman, Peter and Wilhelm, Dagmar (2011). SRY, sex determination and gonadal differentiation. In Cheryll Tickle (Ed.), eLS eLS: Developmental Biology ed. (pp. 1-9) Chichester, U.K.: John Wiley & Sons. doi:10.1002/047001590X 159 9 0
Koopman, P. A. (2001). Sry, Sox9 and mammalian sex determination. In Scherer, G, Schmid and M (Ed.), Genes and Mechanisms in Vertebrate Sex Determination (pp. 25-56) Switzerland: Birkhauser, Basel. 110  
Kashimada, K and Koopman, P (2010) Sry: the master switch in mammalian sex determination. Development, 137 23: 3921-3930. doi:10.1242/dev.048983 46   71 Cited 72 times in Scopus72 11
Koltowska, Katarzyna, Apitz, Holger, Stamataki, Despina, Hirst, Elizabeth M. A., Verkade, Heather, Salecker, Iris and Ober, Elke A. (2013) Ssrp1a controls organogenesis by promoting cell cycle progression and RNA synthesis. Development (Cambridge), 140 9: 1912-1918. doi:10.1242/dev.093583 8   0 Cited 0 times in Scopus0 2
Liu, F., Zhuang, P., Anh, V., Turner, I. and Burrage, K. (2007) Stability and convergence of the difference methods for the space-time fractional advection-diffusion equation. Applied Mathematics and Computation, 191 1: 12-20. doi:10.1016/j.amc.2006.08.162 141   103 Cited 110 times in Scopus110 1
Moloney, Gerard P., Iskander, Magdy N. and Craik, David J. (2010) Stability studies of oxazolidine-based compounds using 1H NMR spectroscopy. Journal of Pharmaceutical Sciences, 99 8: 3362-3371. doi:10.1002/jps.22108 57   2 Cited 2 times in Scopus2 0
Lovelace, Erica S., Gunasekera, Sunithi, Alvarmo, Charlotta, Clark, Richard J., Nevin, Simon T., Grishin, Anton A., Adams, David J., Craik, David J. and Daly, Norelle L. (2011) Stabilization of α-conotoxin AuIB: Influences of disulfide connectivity and backbone cyclization. Antioxidants and Redox Signaling, 14 1: 87-95. doi:10.1089/ars.2009.3068 69 20 12 Cited 12 times in Scopus12 0
Gori, Alessandro, Wang, Ching-I A., Harvey, Peta J., Rosengren, K. Johan, Bhola, Rebecca F., Gelmi, Maria L., Longhi, Renato, Christie, Macdonald J., Lewis, Richard J., Alewood, Paul F. and Brust, Andreas (2015) Stabilization of the Cysteine-Rich Conotoxin MrIA by Using a 1,2,3-Triazole as a Disulfide Bond Mimetic. Angewandte Chemie - International Edition, 54 4: 1361-1364. doi:10.1002/anie.201409678 15   Cited 0 times in Scopus0 0

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