Institute for Molecular Bioscience - Publications

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Scanlon, MJ, Naranjo, D, Thomas, L, Alewood, PF, Lewis, RJ and Craik, DJ (1997) Solution structure and proposed binding mechanism of a novel potassium channel toxin kappa-conotoxin PVIIA. Structure, 5 12: 1585-1597. doi:10.1016/S0969-2126(97)00307-9 80   68 0
Jia, Xinying, Schulte, Leigh, Loukas, Alex, Pickering, Darren, Pearson, Mark, Mobli, Mehdi, Jones, Alun, Rosengren, Karl J., Daly, Norelle L., Gobert, Geoffrey N., Jones, Malcolm K., Craik, David J. and Mulvenna, Jason (2014) Solution structure, membrane interactions and protein binding partners of the tetraspanin Sm-TSP-2, a vaccine antigen from the human blood fluke Schistosoma mansoni. Journal of Biological Chemistry, Papers in Press 10: 1-26. doi:10.1074/jbc.M113.531558 47   1 Cited 2 times in Scopus2 0
Gehrmann, John, Daly, Norelle L., Alewood, Paul F. and Craik, David J. (1999) Solution structure of alpha-conotoxin ImI by H-1 nuclear magnetic resonance. Journal of Medicinal Chemistry, 42 13: 2364-2372. doi:10.1021/jm990114p 60   43 Cited 43 times in Scopus43 0
Coles, M, Bicknell, W, Watson, AA, Fairlie, DP and Craik, DJ (1998) Solution structure of amyloid beta-peptide(1-40) in a water-micelle environment. Is the membrane-spanning domain where we think it is?. Biochemistry, 37 31: 11064-11077. doi:10.1021/bi972979f 267   318 Cited 315 times in Scopus315 0
Rosengren, K. J., Daly, N. L., Scanlon, M. J. and Craik, D. J. (2001) Solution structure of BSTI: A new trypsin inhibitor from skin secretions of Bombina bombina. Biochemistry, 40 15: 4601-4609. doi:10.1021/bi002623v 71   13 Cited 12 times in Scopus12 0
Torres, A. M., Bansal, P., Alewood, P. F., Bursill, J. A., Kuchel, P. W. and Vandenberg, J. I. (2003) Solution structure of CnErg1 (Ergtoxin), a HERG specific scorpion toxin. Febs Letters, 539 1-3: 138-142. doi:10.1016/S0014-5793(03)00216-3 57   31 Cited 30 times in Scopus30 3
Nilsson, K. P. R., Lovelace, E. S., Caesar, C. E., Tynngard, N., Alewood, P. F., Johansson, H. M., Sharpe, I. A., Lewis, R. J., Daly, N. L. and Craik, D. J. (2005) Solution structure of χ-conopeptide MrIA, a modulator of the human norepinephrine transporter. Biopolymers, 80 6: 815-823. doi:10.1002/bip.20302 73   21 Cited 22 times in Scopus22 0
Nielsen, K. J., Watson, M., Adams, D. J., Hammarström, A. K., Gage, P. W., Hill, J. M., Craik, D. J., Thomas, L., Adams, D., Alewood, P. F. and Lewis, R. J. (2002) Solution Structure of µ-Conotoxin PIIIA, a Preferential Inhibitor of Persistent Tetrodotoxin-sensitive Sodium Channels. Journal of Biological Chemistry, 277 30: 27247-27255. doi:10.1074/jbc.M201611200 83   59 Cited 60 times in Scopus60 3
Whitten, Andrew E., Smith, Brian J., Menting, John G., Margetts, Mai B., McKern, Neil M., Lovrecz, George O., Adams, Timothy E., Richards, Kim, Bentley, John D., Trewhella, Jill, Ward, Colin W. and Lawrence, Michael C. (2009) Solution structure of ectodomains of the insulin receptor family: The ectodomain of the Type 1 insulin-like growth factor receptor displays asymmetry of ligand binding accompanied by limited conformational change. Journal of Molecular Biology, 394 5: 878-892. doi:10.1016/j.jmb.2009.10.011 38   10 Cited 13 times in Scopus13 0
Lauber, Thomas, Neudecker, Philipp, Rösch, Paul and Marx, Ute C. (2003) Solution Structure of Human Proguanylin: The role of a hormone prosequence. Journal of Biological Chemistry, 278 26: 24118-24124. doi:10.1074/jbc.M300370200 35   9 Cited 10 times in Scopus10 3
Watson, AA, Fairlie, DP and Craik, DJ (1998) Solution structure of methionine-oxidized amyloid beta-peptide (1-40). Does oxidation affect conformational switching?. Biochemistry, 37 37: 12700-12706. doi:10.1021/bi9810757 186   102 Cited 103 times in Scopus103 0
Pallaghy, PK, Alewood, D, Alewood, PF and Norton, RS (1997) Solution structure of robustoxin, the lethal neurotoxin from the funnel-web spider Atrax robustus. Febs Letters, 419 2-3: 191-196. doi:10.1016/S0014-5793(97)01452-X 275   49 Cited 51 times in Scopus51 3
Hawkins, B., Cross, K. and Craik, D. (1995) Solution structure of the B-chain of insulin as determined by 1H NMR spectroscopy. Comparison with the crystal structure of the insulin hexamer and with the solution structure of the insulin monomer. International Journal of Peptide and Protein Research, 46 5: 424-433. doi:10.1111/j.1399-3011.1995.tb01077.x 39   24 Cited 24 times in Scopus24 0
Barry, D. G., Daly, N. L., Bokesch, H. R., Gustafson, K. R. and Craik, D. J. (2004) Solution structure of the cyclotide palicourein: Implications for the development of a pharmaceutical framework. Structure, 12 1: 85-94. doi:10.1016/j.str.2003.11.019 37   31 Cited 30 times in Scopus30 0
Bhati, Mugdha, Lee, Christopher, Gadd, Morgan S., Jeffries, Cy M., Kwan, , Ann, Whitten, Andrew E., Trewhella, Jill, Mackay, Joel P. and Matthews, Jacqueline M. (2012) Solution structure of the LIM-homeodomain transcription factor complex Lhx3/Ldb1 and the effects of a pituitary mutation on key Lhx3 interactions. PLoS One, 7 7: . doi:10.1371/journal.pone.0040719 12   5 Cited 5 times in Scopus5 1
Hill, JM, Alewood, PF and Craik, DJ (1997) Solution structure of the sodium channel antagonist conotoxin GS: A new molecular caliper for probing sodium channel geometry. Structure, 5 4: 571-583. doi:10.1016/S0969-2126(97)00212-8 84   36 0
Korsinczky, M. L. J., Schirra, H. J., Rosengren, K. J., West, J., Condie, B. A., Otvos, L., Anderson, M. A. and Craik, D. J. (2001) Solution structures by H-1 NMR of the novel cyclic trypsin inhibitor SFTI-1 from sunflower seeds and an acyclic permutant. Journal of Molecular Biology, 311 3: 579-591. doi:10.1006/jmbi.2001.4887 66   117 Cited 108 times in Scopus108 0
Poulsen, Sally-Ann, Watson, Andrew A., Fairlie, David P. and Craik, David J. (2000) Solution structures in aqueous SDS micelles of two amyloid beta peptides of A beta(1-28) mutated at the alpha-secretase cleavage site (K16E, K16F). Journal of Structural Biology, 130 2-3: 142-152. doi:10.1006/jsbi.2000.4267 108   26 Cited 30 times in Scopus30 0
Rosengren, K. Johan, Wilson, David, Daly, Norelle L., Alewood, Paul F. and Craik, David J. (2002) Solution Structures of the cis- and trans-Pro30 Isomers of a Novel 38-Residue Toxin from the Venom of Hadronyche Infensa sp. that Contains a Cystine-Knot Motif within Its Four Disulfide Bonds. Biochemistry, 41 10: 3294-3301. doi:10.1021/bi011932y 52   28 Cited 28 times in Scopus28 0
Zahariev, S., Guarnaccia, C., Lamba, D., Cemazar, M. and Pongor, S. (2004) Solvent-free synthesis of azole carboximidamides. Tetrahedron Letters, 45 51: 9423-9426. doi:10.1016/j.tetlet.2004.10.114 184   7 Cited 8 times in Scopus8 0
Muttenthaler, Marcus, Nevin, Simon T., Grishin, Anton A., Ngo, Shyuan T., Choy, Peng T., Daly, Norelle L., Hu, Shu-Hong, Armishaw, Christopher J., Wang, Ching-I. A., Lewis, Richard J., Martin, Jennifer L., Noakes, Peter G., Craik, David J., Adams, David J. and Alewood, Paul F. (2010) Solving the alpha-conotoxin folding problem: Efficient selenium-directed on-resin generation of more potent and stable nicotinic acetylcholine receptor antaqonists. Journal of the American Chemical Society, 132 10: 3514-3522. doi:10.1021/ja910602h 180   51 Cited 49 times in Scopus49 0
Kassahn, Karin S., Holmes, Oliver, Nones, Katia, Patch, Ann-Marie, Miller, David K., Christ, Angelika K., Harliwong, Ivon, Bruxner, Timothy J., Xu, Qinying, Anderson, Matthew, Wood, Scott, Leonard, Conrad, Taylor, Darrin, Newell, Felicity, Song, Sarah, Idrisoglu, Senel, Nourse, Craig, Nourbakhsh, Ehsan, Manning, Suzanne, Wani, Shivangi, Steptoe, Anita, Pajic, Marina, Cowley, Mark J., Pinese, Mark, Chang, David K., Gill, Anthony J., Johns, Amber L., Wu, Jianmin, Wilson, Peter J., Fink, Lynn, Biankin, Andrew V., Waddell, Nicola, Grimmond, Sean M. and Pearson, John V. (2013) Somatic point mutation calling in low cellularity tumors. PloS One, 8 11: e74380.1-e74380.10. doi:10.1371/journal.pone.0074380 88   2 Cited 4 times in Scopus4 2
Ineson, Jessica, Stayner, Cherie, Hazlett, Jody, Slobbe, Lynn, Robson, Ewan, Legge, Michael and Eccles, Michael R. (2012) Somatic reactivation of expression of the silent maternal Mest allele and acquisition of normal reproductive behaviour in a colony of Peg1/Mest mutant mice. Journal of Reproduction and Development, 58 4: 490-500. doi:10.1262/jrd.11-115A 35   0 Cited 0 times in Scopus0 0
Baillie, J. Kenneth, Barnett, Mark W., Upton, Kyle R., Gerhardt, Daniel J., Richmond, Todd A., De Sapio, Fioravante, Brennan. Paul M., Rizzu, Patrizia, Smith, Sarah, Fell, Mark, Talbot, Richard T., Gustincich, Stefano, Freeman, Thomas C., Mattick, John S., Hume, David A., Heutink, Peter, Carninci, Piero, Jeddeloh, Jeffrey A. and Faulkner, Geoffrey J. (2011) Somatic retrotransposition alters the genetic landscape of the human brain. Nature, 479 7374: 534-537. doi:10.1038/nature10531 49   170 Cited 178 times in Scopus178 95
Caron, Bertrand, Mark, Alan E. and Poger, David (2014) Some like it hot: the effect of sterols and hopanoids on lipid ordering at high temperature. Journal of Physical Chemistry Letters, 5 22: 3953-3957. doi:10.1021/jz5020778 61   0 Cited 0 times in Scopus0 2
Liu, F., Burrage, K and Hamilton, N. A. (2013) Some novel techniques of parameter estimation of dynamical models in biological systems. IMA Journal of Applied Mathematics, 78 2: 235-260. doi:10.1093/imamat/hxr046 50   1 Cited 1 times in Scopus1 0
Kristanti, A. N., Aminah, N. S., Tangung, M., Amirah, Fandini, N., Indriyani, Y., Prajitno, Widi, D. S., Rudiyansyah and Garson, M. J. (2006). Some phenolic compounds from Cassia spectabilis DC stem bark. In: Abstracts of the 12th Asian Symposium on Medicinal Plants, Spices and other Natural Products. 12th Asian Symposium on Medicinal Plants, Spices and other Natural Products, Padang, Indonesia, (). November, 2006. 68  
Dave, Richa K., Ellis, Tammy, Toumpas, Melissa C., Robson, Jonathan P., Julian, Elaine, Adolphe, Christelle, Bartlett, Perry F., Cooper, Helen M., Reynolds, Brent A. and Wainwright, Brandon J. (2011) Sonic hedgehog and notch signaling can cooperate to regulate neurogenic divisions of neocortical progenitors. PLoS One, 6 2: e14680-1-e14680-13. doi:10.1371/journal.pone.0014680 118 29 19 Cited 26 times in Scopus26 0
Merino-Trigo, A., Kerr, M. C., Houghton, F., Lindberg, A., Mitchell, C., Teasdale, R. D. and Gleeson, P. A. (2004) Sorting nexin 5 is localized to a subdomain of the early endosomes and is recruited to the plasma imembrane following EGF stimulation. Journal of Cell Science, 117 26: 6413-6424. doi:10.1242/jcs.01561 95   39 Cited 38 times in Scopus38 3
Bauer, Denis C., Willadsen, Kai, Buske, Fabian A., Lê Cao, Kim-Anh, Bailey, Timothy L., Dellaire, Graham and Bodén, Mikael (2011) Sorting the nuclear proteome. Bioinformatics, 27 13: i7-i14. doi:10.1093/bioinformatics/btr217 85   8 Cited 11 times in Scopus11 0
Nicolau Jr, D V, Hancock, John F. and Burrage, Kevin (2007) Sources of Anomalous Diffusion on Cell Membranes: A Monte Carlo Study. Biophysical journal, 92 6: 1975-1987. doi:10.1529/biophysj.105.076869 66   57 Cited 56 times in Scopus56 0
Polanco, J. C., Wilhelm, D, Davidson, T. L., Knight, D and Koopman, P (2010) Sox10 gain-of-function causes XX sex reversal in mice: implications for human 22q-linked disorders of sex development. Human Molecular Genetics, 19 3: 506-516. doi:10.1093/hmg/ddp520 844   40 Cited 41 times in Scopus41 0
Hargrave, Murray, James, Kristy, Yamada, Toshiya and Koopman, Peter (2000) Sox14 maps to mouse Chromosome 9 and shows no mutations in the neurological mouse mutants ducky and tippy. Mammalian Genome, 11 3: 231-233. doi:10.1007/s003350010042 29   2 Cited 3 times in Scopus3 0
Cermenati, Solei, Moleri, Silvia, Cimbro, Simona, Corti, Paola, Del Giacco, Luca, Amodeo, Roberta, Dejana, Elisabetta, Koopman, Peter A., Cotelli, Franco and Beltrame, Monica (2008) Sox18 and Sox 7 play redundant roles in vascular development. Blood, 111 5: 2657-2666. doi:10.1182/blood-2007-07-100412 87   80 Cited 78 times in Scopus78 0
Downes, Meredith and Koopman, Peter (2001) SOX18 and the transcriptional regulation of blood vessel development. Trends In Cardiovascular Medicine, 11 8: 318-324. doi:10.1016/S1050-1738(01)00131-1 68   46 Cited 47 times in Scopus47 0
Cermenati, Solei, Moleri, Silvia, Neyt, Christine, Bresciani, Erica, Carra, Silvia, Grassini, Daniela R., Omini, Alice, Cotelli, Franco, Francois, Mathias, Hogan, Benjamin M. and Beltrame, Monica (2013). Sox18 and VegfC genetically interact in the early phases of lymphatic development in zebrafish. In: NAVBO Workshops in Vascular Biology, Pacific Grove, CA, United States, (250-250). 14-18 October 2012. doi:10.1007/s10456-012-9326-5 64   0 0
Hosking, B. M., Wang, S. C. M., Chen, S. L., Penning, S., Koopman, P. and Muscat, G. E. O. (2001) SOX18 directly interacts with MEF2C in endothelial cells. Biochemical And Biophysical Research Communications, 287 2: 493-500. doi:10.1006/bbrc.2001.5589 56   29 Cited 30 times in Scopus30 3
Olsson, J. E., Kamachi, Y., Penning, S., Muscat, G. E. O., Kondoh, H. and Koopman, P. (2001) Sox18 expression in blood vessels and feather buds during chicken embryogenesis. Gene, 271 2: 151-158. doi:10.1016/S0378-1119(01)00505-4 53   10 Cited 12 times in Scopus12 0
Cermenati, Solei, Moleri, Silvia, Neyt, Christine, Bresciani, Erica, Carra, Silvia, Grassini, Daniela R., Omini, Alice, Goi, Michela, Cotelli, Franco, François, Mathias, Hogan, Benjamin M. and Beltrame, Monica (2013) Sox18 genetically interacts With VegfC to regulate lymphangiogenesis in zebrafish. Arteriosclerosis, Thrombosis and Vascular Biology, 33 6: 1238-1247. doi:10.1161/ATVBAHA.112.300254 42   8 Cited 8 times in Scopus8 2
Francois, Mathias, Caprini, Andrea, Hosking, Brett, Orsenigo, Fabrizio, Wilhelm, Dagmar, Browne, Catherine, Paavonen, Karri, Karnezis, Tara, Shayan, Ramin, Downes, Meredith, Davidson, Tara, Tutt, Desmond, Cheah, Kathryn S. E., Stacker, Steven A., Muscat, George E. O., Achen, Marc G., Dejana, Elisabetta and Koopman, Peter (2008) Sox18 induces development of the lymphatic vasculature in mice. Nature, 456 7222: 643-647. doi:10.1038/nature07391 132   170 Cited 182 times in Scopus182 1
Darby, I. A., Bisucci, T., Raghoenath, S., Olsson, J., Muscat, G. E. O. and Koopman, P. (2001) Sox18 is transiently expressed during angiogenesis in granulation tissue of skin wounds with an identical expression pattern to Flk-1 mRNA. Laboratory Investigation, 81 7: 937-943. 89   27
James, K., Hosking, B., Gardner, J., Muscat, G. E. O. and Koopman, P. (2003) Sox18 mutations in the ragged mouse alleles ragged-like and opossum. Genesis, 36 1: 1-6. doi:10.1002/gene.10190 83   37 Cited 36 times in Scopus36 0
Hosking, B, Francois, M, Wilhelm, D, Orsenigo, F, Caprini, A, Svingen, T, Tutt, D, Davidson, T, Browne, C, Dejana, E and Koopman, P (2009) Sox7 and Sox17 are strain-specific modifiers of the lymphangiogenic defects caused by Sox18 dysfunction in mice. DEVELOPMENT, 136 14: 2385-2391. doi:10.1242/dev.034827 51   39 Cited 38 times in Scopus38 0
Kennedy, Claire L., Koopman, Peter A., Mishina, Yuji and O'Bryan, Moira K. (2007) Sox8 and Sertoli-cell function. Annals of the New York Academy of Science, 1120 (Special Issue: Testicular Chromosome Structure and Gene Expression) 104-113. doi:10.1196/annals.1411.007 50   4 Cited 4 times in Scopus4 0
O'Bryan, Moira K., Takada, Shuji, Kennedy, Claire L., Scott, Greg, Harada, Shun-ichi, Ray, Manas K., Dai, Qunsheng., Wilhelm, Dagmar, de Krester, David M., Eddy, E. Mitch, Koopman, Peter and Mishina, Yuji (2008) Sox8 is a critical regulator of adult Sertoli cell function and male fertility. Developmental Biology, 316 2: 359-370. doi:10.1016/j.ydbio.2008.01.042 69   39 Cited 42 times in Scopus42 0
Takada, S., DiNapoli, L., Capel, B. and Koopman, P. (2004) Sox8 is expressed at similar levels in gonads of both sexes during the sex determining period in turtles. Developmental Dynamics, 231 2: 387-395. doi:10.1002/dvdy.20132 51   16 Cited 16 times in Scopus16 0
Schepers, G., Wilson, M., Wilhelm, D. and Koopman, P. (2003) SOX8 is expressed during testis differentiation in mice and synergizes with SF1 to activate the Amh promoter in vitro. Journal of Biological Chemistry, 278 30: 28101-28108. doi:10.1074/jbc.M304067200 52   91 Cited 99 times in Scopus99 3
Flammiger, A., Besch, R., Cook, A. L., Maier, T., Sturm, R. A. and Berking, C. (2009) Sox9 and Sox10 but not BRN2 are required for Nestin expression in Human Melanoma Cells. Journal of Investigative Dermatology, 129 4: 945-953. doi:10.1038/jid.2008.316 44   25 Cited 26 times in Scopus26 0
Ng, Ling-Jim, Wheatley, Susan, Muscat, George E. O., Conway-Campbell, John, Bowles, Jo, Wright, Edwina, Bell, Donald M., Cheah, Kathryn S. E. and Koopman, Peter (1997) SOX9 binds DNA, activates transcription, and coexpresses with type II collagen during chondrogenesis in the mouse. Developmental Biology, 183 1: 108-121. doi:10.1006/dbio.1996.8487 36   418 Cited 433 times in Scopus433 0
Beverdam, Annemiek, Svingen, Terje, Bagheri-Fam, Stefan, Bernard, Pascal, McClive, Peter, Robson, Mathew, Khojasteh, Mahdi Banan, Salehi, Mahboubeh, Sinclair, Andrew H., Harley, Vincent R. and Koopman, Peter (2009) Sox9-dependent expression of Gstm6 in Sertoli cells during testis development in mice. Reproduction, 137 3: 481-486. doi:10.1530/REP-08-0336 71   3 Cited 4 times in Scopus4 0

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