Institute for Molecular Bioscience - Publications

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Bustamam, Alhadi, Burrage, Kevin and Hamilton, Nicholas A. (2010). A GPU implementation of fast parallel Markov clustering in Bioinformatics using ELLPACK-R sparse data format. In: Juan E. Guerrero, Proceedings of the 2nd International Conference on Advances in Computing, Control and Telecommunication Technologies. ACT 2010, Jakarta, Indonesia, (173-175). 2 - 3 December, 2010. doi:10.1109/ACT.2010.10 158 4 Cited 1 times in Scopus1 0
Darwen, PJ, Tran, TT, Bourne, GT, Nielson, JL and Smythe, ML (2006) A gradient descent algorithm for minimizing amino acid coupling reactions when synthesizing cyclic-peptide libraries. Combinatorial Chemistry & High Throughput Screening, 9 7: 559-563. doi:10.2174/138620706777935333 100   0 Cited 0 times in Scopus0 0
Smout, M. J., Laha, T, Mulvenna, J, Sripa, B, Suttiprapa, S, Jones, A, Brindley, PJ and Loukas, A (2009) A Granulin-Like Growth Factor Secreted by the Carcinogenic Liver Fluke, Opisthorchis viverrini, Promotes Proliferation of Host Cells. PLoS Pathogens, 5 10: x-x. doi:10.1371/journal.ppat.1000611 81   47 Cited 48 times in Scopus48 3
Lee, H., Hwang, J., Duggleby, R. G., Winzor, D. J., Smith, R. W. and Kroon, P. A. (2000). A high affinity calcium binding site determines the folding efficiency of a ligand-binding modul of the human low density lipoprotein receptor. In: ComBio 2000 : combined conference abstracts : 44th Annual ASBMB, 40th Annual ASPP, Annual NZSBMB, 22nd Annual NZSPP. Combio 2000, Wellington, New Zealand, (1-58). 11-14 December, 2000. 65  
Richette, Pascal, François, Mathias, Vicaut, Eric, Fitting, Catherine, Bardin, Thomas, Corvol, Maїté, Savouret, Jean-François and Rannou, François (2008) A high interleukin 1 receptor antagonist/IL-1beta ratio occurs naturally in knee osteoarthritis. Journal of Rheumatology, 35 8: 1650-1654. 69   20 Cited 23 times in Scopus23
Himes, S. R., Tagoh, H., Goonetilleke, N., Sasmono, T., Oceandy, D., Clark, R., Bonifer, C. and Hume, D. A. (2001) A highly conserved c-fms gene intronic element controls macrophage-specific and regulated expression. Journal of Leukocyte Biology, 70 5: 812-820. 68   50
Little, Melissa H., Brennan, Jane, Georgas, Kylie, Davies, Jamie A., Davidson, Duncan R., Baldock, Richard A., Beverdam, Annemiek, Bertram, John F., Capel, Blanche, Chiu, Han Sheng, Clements, Dave, Cullen-McEwen, Luise, Fleming, Jean, Gilbert, Thierry, Herzlinger, Doris, Houghton, Derek, Kaufman, Matt H., Kleymenova, Elena, Koopman, Peter A., Lewis, Alfor G., McMahon, Andrew P., Mendelsohn, Cathy L., Mitchell, Eleanor K., Rumballe, Bree A., Sweeney, Derina E., Valerius, M. Todd, Yamada, Gen, Yang, Yiya and Yu, Jing (2007) A high-resolution anatomical ontology of the developing murine genitourinary tract. Gene Expression Patterns, 7 6: 680-699. doi:10.1016/j.modgep.2007.03.002 161   50 Cited 58 times in Scopus58 0
Little, MH, Brennan, J, Georgas, K, Davies, JA, Davidson, DR, Baldock, RA, Beverdam, A, Bertram, JF, Capel, B, Chiu, HS, Clements, D, Cullen-McEwen, L, Fleming, J, Gilbert, T, Herzlinger, D, Houghton, D, Kaufman, MH, Kleymenova, E, Koopman, PA, Lewis, AG, McMahon, AP, Mendelsohn, CL, Mitchell, EK, Rumballe, BA, Sweeney, DE, Valerius, MT, Yamada, G, Yang, Y and Yu, J (2007) A high-resolution anatomical ontology of the developing murine genitourinary tract (vol 7, pg 680, 2007). Gene Expression Patterns, 8 1: 47-50. doi:10.1016/j.modgep.2007.07.003 44   0 Cited 1 times in Scopus1 0
McBride, Jeffrey D. and Cooper, Matthew A. (2008) A high sensitivity assay for the inflammatory marker C-Reactive protein employing acoustic biosensing. Journal of Nanobiotechnology, 6 5: 134-8. doi:10.1186/1477-3155-6-5 77   Cited 17 times in Scopus17 0
Bagriantsev S.N., Ang K.-H., Gallardo-Godoy A., Clark K.A., Arkin M.R., Renslo A.R. and Minor D.L. (2013) A high-throughput functional screen identifies small molecule regulators of temperature- and mechano-sensitive K2P channels. ACS Chemical Biology, 8 8: 1841-1851. doi:10.1021/cb400289x 11   7 Cited 10 times in Scopus10 0
Felitti, S. A., Tian, P, Edwards, D. and et al. (2005). A high-throughput gene silencing approach for studying the interaction between perennial ryegrass (Lolium perenne) and the fungal endophyte Neotyphodium lolii. In: M.O. Humphreys, Molecular Breeding for the Genetic Improvement of Forage Crops and Turf : Proceedings of the 4th International Symposium on the Molecular Breeding of Forage and Turf, a satellite workshop of the XXth International Grassland Congress. 4th International Symposium on the Molecular Breeding of Forage and Turf, Aberystwyth, Wales, (215). 3-7 July, 2005. 112  
Škalamera, Dubravka, Ranall, Max V., Wilson, Benjamin M., Leo, Paul, Purdon, Amy S., Hyde, Carolyn, Nourbakhsh, Ehsan, Grimmond, Sean M., Barry, Simon C., Gabrielli, Brian and Gonda, Thomas J. (2011) A high-throughput platform for lentiviral overexpression screening of the human ORFeome. PLoS One, 6 5: e20057.1-e20057.14. doi:10.1371/journal.pone.0020057 135 86 20 Cited 20 times in Scopus20 0
Nagaraj, Shivashankar H., Gasser, Robin B. and Ranganathan, Shoba (2007) A hitchhiker's guide to expressed sequence tag (EST) analysis. Briefings in Bioinformatics, 8 1: 6-21. doi:10.1093/bib/bbl015 52   114 Cited 144 times in Scopus144 3
Lin, Min-Hsuan, Sivakumaran, Haran, Jones, Alun, Li, Dongsheng, Harper, Callista, Wei, Ting, Jin, Hongping, Rustanti, Lina, Meunier, Frederic A., Spann, Kirsten and Harrich, David (2014) A HIV-1 Tat mutant protein disrupts HIV-1 Rev function by targeting the DEAD-box RNA helicase DDX1. Retrovirology, 11 1: 121.1-121.16. doi:10.1186/s12977-014-0121-9 22   0 Cited 0 times in Scopus0 0
Ender, Christine, Krek, Azra, Friedlaender, Marc R., Beitzinger, Michaela, Weinmann, Lasse, Chen, Wei, Pfeffer, Sebastien, Rajewsky, Nikolaus and Meister, Gunter (2008) A human snoRNA with microRNA-like functions. Molecular Cell, 32 4: 519-528. doi:10.1016/j.molcel.2008.10.017 29   338 Cited 341 times in Scopus341 4
Harlow, Timothy J., Gogarten, J. Peter and Ragan, Mark A. (2004) A hybrid clustering approach to recognition of protein families in 114 microbial genomes. Bmc Bioinformatics, 5 Article 45. doi:10.1186/1471-2105-5-45 76   27 Cited 34 times in Scopus34 0
Sagulenko, V., Thygesen, S. J., Sester, D. P., Idris, A., Cridland, J. A., Vajjhala, P. R., Roberts, T., Schroder, K., Vince, J. E., Hill, J. M., Silke, J. and Stacey, K. J. (2013) AIM2 and NLRP3 inflammasomes activate both apoptotic and pyroptotic death pathways via ASC. Cell Death and Differentiation, 20 9: 1149-1160. doi:10.1038/cdd.2013.37 97   46 Cited 45 times in Scopus45 0
Cooper, M. A. (2002) Akubio: Label-free screening of molecular interactions using acoustic detection. Drug Discovery Today, 7 5: S5-S7. 46  
Teasdale, R. D., Loci, D., Houghton, F., Karlsson, L. and Gleeson, P. A. (2001) A large family of endosome-localized proteins related to sorting nexin 1. Biochemical Journal, 358 1: 7-16. doi:10.1042/0264-6021:3580007 98   94 Cited 91 times in Scopus91 3
Jackson, Lauren P., Kelly, Bernard T., McCoy, Airlie J., Gaffry, Thomas, James, Leo C., Collins, Brett M., Honing, Stefan, Evans, Philip R. and Owen, David J. (2010) A large-scale conformational change couples membrane recruitment to cargo binding in the AP2 clathrin adaptor complex. Cell, 141 7: 1220-1229. doi:10.1016/j.cell.2010.05.006 56   102 Cited 103 times in Scopus103 1
Hagman, M., Hayes R. A., Capon, R. J. and Shine, R. (2009) Alarm cues experienced by cane toad tadpoles affect post-metamorphic morphology and chemical defences. Functional Ecology, 23 1: 126-132. doi:10.1111/j.1365-2435.2008.01470.x 69   24 Cited 27 times in Scopus27 0
Mylne, Joshua S., Colgrave, Michelle L., Daly, Norelle L., Chanson, Aurelie H., Elliott, Alysha G., McCallum, Emily J., Jones, Alun and Craik, David J. (2011) Albumins and their processing machinery are hijacked for cyclic peptides in sunflower. Nature Chemical Biology, 7 5: 257-259. doi:10.1038/nchembio.542 77   42 Cited 37 times in Scopus37 0
Burcham, Philip C., Kaminskas, Lisa M., Fontaine, Frank R., Petersen, Dennis R. and Pyke, Simon M. (2002) Aldehyde-Sequestering Drugs: Tools for Studying Protein Damage by Lipid Peroxidation Products. Toxicology, 181-182 229-236. doi:10.1016/S0300-483X(02)00287-1 51   64 Cited 63 times in Scopus63 0
Cloonan, Nicole, Fischer, Katja, Cheng, Qin and Saul, Allan (2001) Aldolase genes of Plasmodium species. Molecular And Biochemical Parasitology, 113 2: 327-330. doi:10.1016/S0166-6851(01)00226-2 64   8 Cited 8 times in Scopus8 0
Le, T., Blair, D. and McManus, D. P. (2001) A leucine zipper protein of mitochondrial origin. Biochimica et Biophysica Acta, 1546 2: 435-443. doi:10.1016/S0167-4838(01)00156-X 36   9 Cited 9 times in Scopus9 0
Stephens, Evan, de Nys, Rocky, Ross, Ian L. and Hankamer, Ben (2013) Algae fuels as an alternative to petroleum. Journal of Petroleum and Environmental Biotechnology, 4 4: 1000148.1-1000148.7. doi:10.4172/2157-7463.1000148 84 4 0
Wong, Emily S. W., Papenfuss, Anthony T., Whittington, Camilla M., Warren, Wesley C. and Belov, Katherine (2012) A limited role for gene duplications in the evolution of platypus venom. Molecular Biology and Evolution, 29 1: 167-177. doi:10.1093/molbev/msr180 41   13 Cited 14 times in Scopus14 0
Williams, Simon J., Ve, Thomas and Kobe, Bostjan (2015) A linker strategy for the production and crystallization of Toll/interleukin-1 receptor/resistance protein domain complexes. Protein Engineering, Design and Selection, 28 5: 137-145. doi:10.1093/protein/gzv013 6   0 1
Olive, C., Batzloff, M. R., Horvath, A., Wong, A., Clair, T., Yarwood, P., Toth, I. and Good, M. F. (2002) A lipid core peptide construct containing a conserved region determinant of the group a streptococcal M protein elicits heterologous opsonic antibodies. Infection And Immunity, 70 5: 2734-2738. doi:10.1128/IAI.70.5.2734-2738.2002 67   44 Cited 43 times in Scopus43 0
Joziasse, Irene C., Smith, Kelly A., Chocron, Sonja, van Dinther, Maarten, Guryev, Victor, van de Smagt, Jasper J., Cuppen, Edwin, ten Dijke, Peter, Mulder, Barbara J. M., Maslen, Cheryl L., Reshey, Benjamin, Doevendans, Pieter A. and Bakkers, Jeroen (2011) ALK2 mutation in a patient with Down's syndrome and a congenital heart defect. European Journal of Human Genetics, 19 4: 389-393. doi:10.1038/ejhg.2010.224 11   10 Cited 10 times in Scopus10 0
Xu, You-Kai, Yang, Sheng-Ping, Liao, Shang-Gao, Zhang, Hua, Lin, Li-Ping, Ding, Jian and Yue, Jian-Min (2006) Alkaloids from Gelsemium elegans. Journal of Natural Products, 69 9: 1347-1350. doi:10.1021/np060156y 295   27 Cited 29 times in Scopus29 0
Quinlan, Kgr, Seto, JT, Turner, N, Floetenmeyer, M, Macarthur, DG, Raftery, JM, Yang, N, Parton, RG, Cooney, GJ and North, KN (2009). alpha-Actinin-3 regulates muscle glycogen phosphorylase: A potential mechanism for the metabolic consequences of the common human null allele of ACTN3. In: Neuromuscular Disorders. 14th International Congress of the World-Muscle-Society, Geneva Switzerland, (545-546). Sep 09-12, 2009. doi:10.1016/j.nmd.2009.06.011 52   0 0
Barry, Adrienne K., Tabdili, Hamid, Muhamed, Ismaeel, Wu, Jun, Shashikanth, Nitesh, Gomez, Guillermo A., Yap, Alpha S., Gottardi, Cara J., de Rooij, Johan, Wang, Ning and Leckband, Deborah E. (2014) alpha-Catenin cytomechanics: role in cadherin-dependent adhesion and mechanotransduction. Journal of Cell Science, Advance Online Article 8: 1-42. doi:10.1242/jcs.139014 32   13 Cited 13 times in Scopus13 1
Broxton, NM, Down, JG, Gehrman, J, Alewood, PF, Satchell, DG and Livett, BG (1999) alpha-Conotoxin ImI inhibits the alpha-bungarotoxin-resistant nicotinic response in bovine adrenal chromaffin cells. Journal of Neurochemistry, 72 4: 1656-1662. doi:10.1046/j.1471-4159.1999.721656.x 121   20 Cited 22 times in Scopus22 0
Kompella, Shiva N., Hung, Andrew, Clark, Richard J. and Adams, David J. (2013). alpha-Conotoxin Regiia Targeting Nicotinic Acetylcholine Receptors: Mutagenesis Studies Improving Selectivity and Potency. In: Abstracts of the 57th Annual Meeting of the Biophysical Society. 57th Annual Meeting of the Biophysical Society, Philadelphia Pa, (634A-634A). 02-06 February 2013. doi:10.1016/j.bpj.2012.11.3505 44   0 0
Nicke, Annette C., Wonnacott, Susan and Lewis, Richard J. (2004) alpha-conotoxins as tools for the elucidation of structure and function of neuronal nicotinic acetylcholine receptor subtypes. European journal of biochemistry, 271 12: 2305-2319. doi:10.1111/j.1432-1033.2004.04145.x 100   79 Cited 76 times in Scopus76 3
Nicke, Annette, Samochocki, Marek, Loughnan, Marion L., Bansal, Paramjit S., Maelicke, Alfred and Lewis, Richard J. (2003) alpha-conotoxins EpI and AuIB switch subtype selectivity and activity in native versus recombinant nicotinic acetylcholine receptors. Febs Letters, 554 1-2: 219-223. doi:10.1016/S0014-5793(03)01161-X 74   35 Cited 34 times in Scopus34 0
Dutton, J. L. and Craik, D. J. (2001) Alpha-conotoxins: Nicotinic acetylcholine receptor antagonists as pharmacological tools and potential drug leads. Current Medicinal Chemistry, 8 4: 327-344. 120   76
Beyer, Renee L., Kelso, Michael J., Reid, Robert C., Le, Giang T. and Fairlie, David P. (2006). Alpha helix induction in HIV REV34-50 by N-terminal nucleators. In: Chemical Engineering News: Abstracts-232nd ACS National Meeting. 232nd ACS National Meeting, San Francisco, CA, U.S.A., (55-55). 10-14 September, 2006. doi:10.1021/cen-v084n034.p055 50   0
Ma, M. T., Hoang, H. N., Beyer, R. L., Bryant, G. K., Appleton, T. G. and Fairlie, D. (2005). Alpha-helix induction in short peptides using metal clips. In: International Chemical Congress of Pacific Basin Societies (Pacifichem2005). International Chemical Congress of Pacific Basin Societies (Pacifichem2005), Honolulu, Hawaii, (xx-xx). 15 - 20 December 2005. 97  
Kelso, Michael J., Beyer, Renée L., Hoang, Huy N., Lakdawala, Ami S., Snyder, James P., Oliver, Warren V., Robertson, Tom A., Appleton, Trevor G. and Fairlie, David P. (2004) Alpha-turn mimetics: short peptide alpha-Helices composed of cyclic metallopentapeptide modules. Journal of The American Chemical Society, 126 15: 4828-4842. doi:10.1021/ja037980i 266   61 Cited 64 times in Scopus64 0
Brown, R. J., Millard, K. N., Nielsen, K. J. and Waters, M. J. (2001). Alteration of growth hormone receptor transmembrane. In: C. Scheck, Proceedings of the Endocrine Society 83rd Annual Meeting. 83rd Annual Meeting of the Endocrine Society, Denver, USA, (179-179). 20-23 June 2001. 51  
Scheepens, A., Sirimanne, E., Beilharz, E., Breier, B. H., Waters, M. J., Gluckman, P. D. and Williams, C. E. (1999) Alterations in the neural growth hormone axis following hypoxic-ischemic brain injury. Molecular Brain Research, 68 1-2: 88-100. doi:10.1016/S0169-328X(99)00051-0 97   44 Cited 51 times in Scopus51 0
Beaumont, K. A., Newton, R. A., Smit, D. J., Leonard, J. H., Stow, J. L. and Sturm, R. A. (2005) Altered cell surface expression of human MC1R variant receptor alleles associated with red hair and skin cancer risk. Human Molecular Genetics, 14 15: 2145-2154. doi:10.1093/hmg/ddi219 97   87 Cited 99 times in Scopus99 1
Svingen, T and Tonissen, KF (2003) Altered HOX gene expression in human skin and breast cancer cells. Cancer Biology & Therapy, 2 5: 518-523. doi:10.4161/cbt.2.5.441 49   22 Cited 23 times in Scopus23 0
Schirra, Horst Joachim, Anderson, Cameron G., Wilson, William J., Kerr, Linda, Craik, David J., Waters, Michael J. and Lichanska, Agnieszka M. (2008) Altered metabolism of growth hormone receptor mutant mice: a combined NMR metabonomics and microarray study. PLoS One, 3 7: e2764-1-e2764-15. doi:10.1371/journal.pone.0002764 108   16 Cited 18 times in Scopus18 0
Wells, CA, Chalk, AM, Forrest, A, Taylor, D, Waddell, N, Schroder, K, Himes, SR, Faulkner, G, Lo, S, Kasukawa, T, Kawaji, H, Kai, C, Kawai, J, Katayama, S, Carninci, P, Hayashizaki, Y, Hume, DA and Grimmond, SM (2006) Alternate transcription of the Toll-like receptor signaling cascade. Genome Biology, 7 2: R10.1-R10.17. doi:10.1186/gb-2006-7-2-r10 83   33 Cited 41 times in Scopus41 0
Zou, J., Liao, X. Z., Cockayne, D. J. H. and Jiang, Z. M. (2002) Alternative mechanism for misfit dislocation generation during high-temperature Ge(Si)/Si(001) island growth. Applied Physics Letters, 81 11: 1996-1998. doi:10.1063/1.1506414 101   22 Cited 20 times in Scopus20 0
Schroder, Wayne, Cloonan, Nicole, Bushell, Gillian and Sculley, Tom (2004) Alternative polyadenylation and splicing of mRNAs transcribed from the human Sin1 gene. Gene, 339 1: 17-23. doi:10.1016/j.gene.2004.07.001 51   21 Cited 19 times in Scopus19 3
Kimura, Takashi, Lueck, John D., Harvey, Peta J., Pace, Suzy M., Ikemoto, Noriaki, Casarotto, Marco G., Kirksen, Robert T. and Dulhunty, Angela F. (2009) Alternative splicing of RyR1 alters the efficacy of skeletal EC coupling. Cell Calcium, 45 3: 264-274. doi:10.1016/j.ceca.2008.11.005 40   24 Cited 25 times in Scopus25 0

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