Institute for Molecular Bioscience - Publications

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Ovchinnikov, Dmitry A., DeBats, Claire E. E., Sester, David P., Sweet, Matthew J. and Hume, David A. (2010) A conserved distal segment of the mouse CSF-1 receptor promoter is required for maximal expression of a reporter gene in macrophages and osteoclasts of transgenic mice. Journal of Leukocyte Biology, 87 5: 815-822. doi:10.1189/jlb.0809557 83   9 Cited 10 times in Scopus10 0
Seizl, Martin, Hartmann, Holger, Hoeg, Friederike, Kurth, Fabian, Martin, Dietmar E., Soding, Johannes and Cramer, Patrick (2011) A conserved GA element in Tata-Less RNA polymerase II promoters. PLoS One, 6 11: . doi:10.1371/journal.pone.0027595 24   11 Cited 12 times in Scopus12 0
Simonsen, S. M., Sando, L., Ireland, D. C., Colgrave, M. L., Bharathi, R., Goransson, U. and Craik, D. J. (2005) A continent of plant defense peptide diversity: Cyclotides in Australian Hybanthus (Violaceae). Plant Cell, 17 11: 3176-3189. doi:10.1105/tpc.105.034678 110   108 Cited 99 times in Scopus99 0
Hough, Shelley R., Laslett, Andrew L., Grimmond, Sean B., Kolle, Gabriel and Pera, Martin F. (2009) A continuum of cell states spans pluripotency and lineage commitment in human embryonic stem cells. PLoS One, 4 11: x-x. doi:10.1371/journal.pone.0007708 100   69 Cited 72 times in Scopus72 0
Cooper, M. A., Lucas, M. A., Taylor, J. M., Ward, A. D. and Williamson, N. M. (2001) A convenient method for the aromatic amino-Claisen rearrangement of N-(1,1-disubstituted-allyl)anilines. Synthesis, 4: 621-625. 110   28 0
Bourne, Gregory T., Nielson, Jonathon L., Coughlan, Justin F., Darwen, Paul, Campitelli, Marc R., Horton, Douglas A., Rhumann, Andreas, Love, Stephen G., Tran, Tran T. and Smythe, Mark L. (2005). A convenient method for the synthesis of cyclic peptide libraries. In John Howl (Ed.), Peptide synthesis and applications (pp. 151-166) Clifton, NJ, USA: Humana Press. 153  
Reid, Robert C., Abbenante, Giovanni, Taylor, Stephen M. and Fairlie, David P. (2003) A convergent solution-phase synthesis of the macrocycle Ac-Phe-[Orn-Pro-D-Cha-Trp-Arg], a potent new antiinflammatory drug. Journal of Organic Chemistry, 68 11: 4464-4471. doi:10.1021/jo034228r 255   35 Cited 36 times in Scopus36 0
Foldynova-Trantirkova, S., Matulova, J., Dotsch, V., Lohr, F., Cirstea, I., Alexandov, K., Breitling, R., Lukes, J. and Trantirek, L. (2009) A cost-effective amino-acid-type selective isotope labeling of proteins expressed in leishmania tarentolae. Journal of Biomolecular Structure & Dynamics, 26 6: 755-762. 162   3 0
Cooper, Matthew A. (2002) Acoustic detection of pathogens using Rupture Event Scanning (REVS). Directions in Science, 1 1-2. doi:10.1100/tsw.2002.68 83   0
Hawkins, Edward, Cooper, Matthew and Campbell, Ian (2006) Acoustic detection technology in the analysis of biomolecular interactions. Innovations in Pharmaceutical Technology, 21 30-34. 63  
Stein, Viktor, Sielaff, India, Johnsson, Kai and Hollfelder, Florian (2007) A covalent chemical genotype-phenotype linkage for in vitro protein evolution. ChemBioChem, 8 18: 2191-2194. doi:10.1002/cbic.200700459 134   19 Cited 19 times in Scopus19 0
Hilton, Heidi N., Doan, Tram B., Dinny Graham, J., Oakes, Samantha R., Silvestri, Audrey, Santucci, Nicole, Kantimm, Silke, Huschtscha, Lily I., Ormandy, Christopher J., Funder, John W., Simpson, Evan R., Kuczek, Elizabeth S., Leedman, Peter J., Tilley, Wayne D., Fuller, Peter J., Muscat, George E. and Clarke, Christine L. (2014) Acquired convergence of hormone signaling in breast cancer: ER and PR transition from functionally distinct in normal breast to predictors of metastatic disease. Oncotarget, 5 18: 8651-8664. 27 30 8 0
Levy, G. C., Craik, D. J., Kumar, A. and London, R. E. (1983) A critical evaluation of models for complex molecular dynamics: application of NMR studies of double- and single-stranded DNA. Biopolymers, 22 12: 2703-2726. doi:10.1002/bip.360221214 40   27 0 0
Hiramatsu, Ryuji, Matoba, Shogo, Kanai-Azuma, Masami, Tsunekawa, Naoki, Katoh-Fukui, Yuko, Kurohmaru, Masamichi, Morohashi, Ken-ichirou, Wilhelm, Dagmar, Koopman, Peter and Kanai, Yoshiakira (2009) A critical time window of Sry action in gonadal sex determination in mice. Development, 136 1: 129-138. doi:10.1242/dev.029587 98   70 Cited 74 times in Scopus74 1
Bogossian, Fiona E., Hepworth, Julie, Leong, Gary M., Flaws, Dylan, Gibbons, Kristen S., Benefer, Christine A. and Turner, Catherine T. (2012) A cross-sectional analysis of patterns of obesity in a cohort of working nurses and midwives in Australia, New Zealand, and the United Kingdom. International Journal of Nursing Studies, 49 6: 727-338. doi:10.1016/j.ijnurstu.2012.01.003 184   8 Cited 15 times in Scopus15 14
McDowall, A. W. (2000). A cryo-electron facility for sub-tropical Southeast Queensland. In: Proceedings of the 7th Asia-Pacific Electron Microscopy Conference, Life Sciences. 7th Asia-Pacific Electron Microscopy Conference, Life Sciences, Singapore, (). June 2000. 80  
Irvine, Katharine M., Burns, Christopher J., Wilks, Andrew F., Su, Stephen, Hume, David A. and Sweet, Matthew J. (2006) A CSF-1 receptor kinase inhibitor targets effector functions and inhibits pro-inflammatory cytokine production from murine macrophage populations. The FASEB Journal, 20 11: 1921-1923. doi:10.1096/fj.06-5848fje 152   50 Cited 17 times in Scopus17 6
Quinlan, Kate G. R., Seto, Jane T., Turner, Nigel, Vandebrouck, Aurelie, Floetenmeyer, Matthias, Macarthur, Daniel G., Raftery, Joanna M., Lek, Monkol, Yang, Nan, Parton, Robert G., Cooney, Gregory J. and North, Kathryn N. (2010) α-Actinin-3 deficiency results in reduced glycogen phosphorylase activity and altered calcium handling in skeletal muscle. Human Molecular Genetics, 19 7: ddq010-1335-ddq010-1346. doi:10.1093/hmg/ddq010 91   29 Cited 28 times in Scopus28 0
Vogal, F., Harvey, J. R., Lohman, R. -J. and Furness, J. B. (2002) Action potential afterdepolarization mediated by a Ca2+-activated cation conductance in myenteric AH neurons. Neuroscience, 115 2: 375-393. doi:10.1016/S0306-4522(02)00410-4 280   24 Cited 26 times in Scopus26 0
Mozar, C. A., Sun, T., Rash, L. D., King, G. F. and Christie, M. J. (2011). Actions of ASIC1a and ASIC3 inhibitors in rat chronic pain models. In: 41st Annual Meeting of the Society for Neuroscience (Neuroscience 2011), Washington, United States, (). 12-16 November 2011. 63  
Walsh, N. C., Alexander, K. A., Manning, C. A., Karmakar, S. K., Wang, J. F., Weyand, C. M., Pettit, A. R. and Gravallese, E. M. (2013) Activated human T cells express alternative mRNA transcripts encoding a secreted form of RANKL. Genes and Immunity, 14 5: 336-345. doi:10.1038/gene.2013.29 51   8 Cited 9 times in Scopus9 4
Groothuizen, Flora S., Poger, David and Mark, Alan E. (2010) Activating the prolactin receptor: Effect of the ligand on the conformation of the extracellular domain. Journal of Chemical Theory and Computation, 6 10: 3274-3283. doi:10.1021/ct1003934 131   2 Cited 2 times in Scopus2 0
Patel, Heena, Polanco-Echeverry, Guadalupe, Segditsas, Stefania, Volikos, Emmanouil, McCart, Amy, Lai, Cecilia, Guenther, Thomas, Zaitoun, Abed, Ilyas, Mohammed, Northover, John and Silver, Anrew (2007) Activation of AKT and nuclear accumulation of wild type TP53 and MDM2 in anal squamous cell carcinoma. International Journal of Cancer, 121 12: 2668-2673. doi:10.1002/ijc.23028 72   16 Cited 19 times in Scopus19 0
Ishtiaq Ahmed, A. S., Xiong, Feng, Pang, Shao-Chen, He, Mu-Dan, Waters, Michael J., Zhu, Zuo-Yan and Sun, Yong-Hua (2011) Activation of GH signaling and GH-independent stimulation of growth in zebrafish by introduction of a constitutively activated GHR construct. Transgenic Research, 20 3: 557-567. doi:10.1007/s11248-010-9439-9 95   10 Cited 10 times in Scopus10 0
Amante, Fiona H., Engwerda, Christian R., Godfrey, Dale I., Haque, Ashraful, Hill, Geoff R., Pellicci, Daniel G., Randall, Louise M., Smyth, Mark J., Stanley, Amanda C. and Zhou, Yonghong (2008) Activation of invariant NKT cells exacerbates experimental visceral leishmaniasis. PLoS Pathogens, 4 2: e1000028-1-e1000028-13. doi:10.1371/journal.ppat.1000028 79   35 Cited 35 times in Scopus35 0
Deuis, Jennifer, Whately, Ella, Brust, Andreas, Inserra, Marco, Asvadi, Naghmeh Hajarol, Lewis, Richard J., Alewood, Paul F., Cabot, Peter J. and Vetter, Irina (2015) Activation of k opioid receptors in cutaneous nerve endings by conorphin-1, a novel subtype-selective conopeptide, does not mediate peripheral analgesia. ACS Chemical Neuroscience, 6 10: 1751-1758. doi:10.1021/acschemneuro.5b00113     2 Cited 2 times in Scopus2 0
Newton, R. A., Smit, S. E., Barnes, C. C., Pedley, J., Parsons, P. G. and Sturm, R. A. (2005) Activation of the cAMP pathway by variant human MC1R alleles expressed in HEK and in melanoma cells. Peptides, 26 10: 1818-1824. doi:10.1016/j.peptides.2004.11.031 141   37 Cited 40 times in Scopus40 0
Poger, David and Mark, Alan E. (2014) Activation of the epidermal growth factor receptor: a series of twists and turns. Biochemistry, 53 16: 2710-2721. doi:10.1021/bi401632z 100   0 0 0
Pelekanos, Rebecca A. and Waters, Michael J. (2006) Activation of the growth hormone receptor. Expert Review of Endocrinology and Metabolism, 1 2: 189-198. doi:10.1586/17446651.1.2.189 93   0
Raggatt, L. J., Evdokiou, A. and Findlay, D. M. (1999) Activation of the insert negative human calcitonin receptor: Phosphorylation of MAP kinase and inhibition of cellular proliferation. Journal of Bone and Mineral Research, 14 SA042 Suppl.: x. 46  
Masters, Seth L., Dunne, Aisling, Subramanian, Shoba L., Hull, Rebecca L., Tannahill, Gillian M., Sharp, Fiona A., Becker, Christine, Franchi, Luigi, Yoshihara, Eiji, Chen, Zhe, Mullooly, Niamh, Mielke, Lisa A., Harris, James, Coll, Rebecca C., Mills, Kingston H. G., Mok, K. Hun, Newsholme, Philip, Nunez, Gabriel, Yodoi, Junji, Kahn, Steven E., Lavelle, Ed C. and O'Neill, Luke A. J. (2010) Activation of the NLRP3 inflammasome by islet amyloid polypeptide provides a mechanism for enhanced IL-1β 2 in type 2 diabetes. Nature Immunology, 11 10: 897-904. doi:10.1038/ni.1935 40   409 Cited 429 times in Scopus429 11
Francois, M., Richette, P., Tsagris, L., Fitting, C., Lemay, C., Benallaoua, M., Tahiri, K. and Corvol, M. T. (2006) Activation of the peroxisome proliferator-activated receptor pathway potentiates interleukin-1 receptor antagonist production in cytokine-treated chondrocytes. Arthritis and Rheumatism, 54 4: 1233-1245. doi:10.1002/art.21728 93   27 Cited 29 times in Scopus29 0
Wu, Selwin K., Lagendijk, Anne K., Hogan, Benjamin M., Gomez, Guillermo A. and Yap, Alpha S. (2015) Active contractility at E-cadherin junctions and its implications for cell extrusion in cancer. Cell Cycle, 14 3: 315-322. doi:10.4161/15384101.2014.989127 53   1 0 0
Barnett, Amanda C., Tsvetanov, Sergey, Gamage, Niranjali, Martin, Jennifer L., Duggleby, Ronald G. and McManus, Michael E. (2004) Active site mutations and substrate inhibition in human sulfotransferase 1A1 and 1A3. The Journal of Biological Chemistry, 279 18: 18799-18805. doi:10.1074/jbc.M312253200 126   32 Cited 36 times in Scopus36 0
Priya, Rashmi and Yap, Alpha S. (2015). Active Tension: The Role of Cadherin Adhesion and Signaling in Generating Junctional Contractility. In Alpha S. Yap (Ed.), Cellular Adhesion in Development and Disease (pp. 65-102) Maryland Heights, MO United States: Academic Press. doi:10.1016/bs.ctdb.2014.11.016 155   7 Cited 8 times in Scopus8 0
Gallardo-Godoy, Alejandra, Muldoon, Craig, Becker, Bernd, Elliott, Alysha G., Lash, Lawrence H, Huang, Johnny X., Butler, Mark S., Pelingon, Ruby, Kavanagh, Angela M., Ramu, Soumya, Phetsang, Wanida, Blaskovich, Mark A. T. and Cooper, Matthew A (2016) Activity and predicted nephrotoxicity of synthetic antibiotics based on polymyxin B. Journal of Medicinal Chemistry, 59 3: 1068-1077. doi:10.1021/acs.jmedchem.5b01593     0 0 0
Lin, Yingxi, Bloodgood, Brenda L., Hauser, Jessica L., Lapan, Ariya D., Koon, Alex C., Kim, Tae-Kyung, Hu, Linda S., Malik, Athar N. and Greenberg, Michael E. (2008) Activity-dependent regulation of inhibitory synapse development by Npas4. Nature, 455 7217: 1198-1204. doi:10.1038/nature07319 48   187 Cited 193 times in Scopus193 1
Papadopulos, Andreas, Gomez, Guillermo A., Martin, Sally, Jackson, Jade, Gormal, Rachel S., Keating, Damien J., Yap, Alpha S. and Meunier, Frederic A. (2015) Activity-driven relaxation of the cortical actomyosin II network synchronizes Munc18-1-dependent neurosecretory vesicle docking. Nature Communications, 6 6297: 1-11. doi:10.1038/ncomms7297 42   4 Cited 4 times in Scopus4 4
Leung, D., Schroder, K., White, H., Fang, N. X., Stoermer, M. J., Abbenante, G., Martin, J. L., Young, P. R. and Fairlie, D. P. (2001) Activity of recombinant dengue 2 virus NS3 protease in the presence of a truncated NS2B co-factor, small peptide substrates, and inhibitors. Journal of Biological Chemistry, 276 49: 45762-45771. doi:10.1074/jbc.M107360200 157   140 Cited 169 times in Scopus169 0
Reyes, Melquiades E. C., Matthew, Louisa, Wang, Joyce, Bishop, Gerard J., Klimyuk, Victor, Jones, Jonathan D.G. and Carroll, Bernard J. (2004) Ac Transposase Induces Methylation of a Ds Transposon in Trausgenic Tomato. Journal of Genome Science and Technology, 3 1: 29-31. doi:10.1166/gl.2004.039 129   0
Tevaearai, Hendrik T., Walton, G. Brant, Keys, Janelle R., Koch, Walter J. and Eckhart, Andrea D. (2005) Acute ischemic cardiac dysfunction is attenuated via gene transfer of a peptide inhibitor of the beta-adrenergic receptor kinase. Journal of Gene Medicine, 7 9: 1172-1177. doi:10.1002/jgm.770 156   11 Cited 15 times in Scopus15 0
Wilson, G, J., Kark, A., Mallett, A., Cameron, A., Wang, Z., Kirby, J., Healy, H.G. and Hoy, W. E. (2015). Acute kidney injury (AKI) associated with chronic kidney disease (CKD) in the renal practices of the Royal Brisbane and Women's Hospital (RBWH)through the CKD.QLD registry.. In: Special Issue: 51st Annual Scientific Meeting of the Australian and New Zealand Society of Nephrology. 51st Annual Scientific Meeting of the Australian and New Zealand Society of Nephrology, Canberra, ACT Australia, (74-74). 7-9 Septemebr 2015. doi:10.1111/nep.12544 11   0
Schroder, Kate, Sagulenko, Vitaliya, Zamoshnikova, Alina, Richards, Ayanthi A., Cridland, Jasmyn A., Irvine, Katharine M., Stacey, Katryn J. and Sweet, Matthew J. (2012) Acute lipopolysaccharide priming boosts inflammasome activation independently of inflammasome sensor induction. Immunobiology, 217 12: 1325-1329. doi:10.1016/j.imbio.2012.07.020 136 85 38 Cited 40 times in Scopus40 0
Driver, Russell W., Hoang, Huy N., Abbenante, Giovanni and Fairlie, David P. (2009) A cyclic beta-strand tripeptide with an alpha-helix like CD spectrum. Organic Letters, 11 14: 3092-3095. doi:10.1021/ol901181b 108   11 Cited 12 times in Scopus12 0
Kelso, Michael J., Hoang, Huy N., Oliver, Warren, Sokolenko, Nikolai, March, Darren R., Appleton, Trevor G. and Fairlie, David P. (2003) A cyclic metallopeptide induces alpha helicity in short peptide fragments of thermolysin. Angewandte Chemie International Edition, 42 4: 421-424. doi:10.1002/anie.200390128 128   28 Cited 30 times in Scopus30 0
Daly, N. L. and Craik, D. J. (2000) Acyclic permutants of naturally occurring cyclic proteins. The Journal of Biological Chemistry, 275 25: 19068-19075. 55  
Daly, NL and Craik, DJ (2000) Acyclic permutants of naturally occurring cyclic proteins - Characterization of cystine knot and beta-sheet formation in the macrocyclic polypeptide kalata B1. Journal of Biological Chemistry, 275 25: 19068-19075. doi:10.1074/jbc.M000450200 92   78 Cited 79 times in Scopus79 0
Kassan, Adam, Herms, Albert, Fernandez-Vidal, Andrea, Bosch, Marta, Schieber, Nicole L., Reddy, Babu J. N., Fajardo, Alba, Gelabert-Baldrich, Mariona, Tebar, Francesc, Enrich, Carlos, Gross, Steven P., Parton, Robert G. and Pol, Albert (2013) Acyl-CoA synthetase 3 promotes lipid droplet biogenesis in ER microdomains. Journal of Cell Biology, 203 6: 985-1001. doi:10.1083/jcb.201305142 47   21 0 0
Tomatis, Vanesa M., Trenchi, Alejandra, Gomez, Guillermo A. and Daniotti, Jose L. (2010) Acyl-Protein Thioesterase 2 Catalizes the Deacylation of Peripheral Membrane-Associated GAP-43. PLoS One, 5 11: e15045 -1-e15045-15. doi:10.1371/journal.pone.0015045 61   44 Cited 43 times in Scopus43 0
Brugnano, L., Burrage, K. and Burrage, P. M. (2000) Adams-type methods for the numerical solution of stochastic ordinary differential equations. BIT Numerical Mathematics, 40 3: 451-470. doi:10.1023/A:1022363612387 74   21 0

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