Institute for Molecular Bioscience - Publications

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de Lumley, Marie, Hart, Darren J., Cooper, Matthew A., Symeonides, Stefan and Blackburn, Jonathon M. (2004) A biophysical characterisation of factors controlling dimerisation and selectivity in the NF-kappa B and NFAT families. Journal of Molecular Biology, 339 5: 1059-1075. doi:10.1016/j.jmb.2004.03.083 127   18 Cited 19 times in Scopus19 0
Ross, Ian (2010). A Bird's eye view of macrophage biology. In Moira Desport (Ed.), Lentiviruses and macrophages: Molecular and cellular interactions 1st ed. (pp. 25-80) Norfolk, UK: Caister Academic Press. 163 1
De Jong-Curtain, Tanya A., Parslow, Adam C., Trotter, Andrew J., Hall , Nathan E., Verkade, Heather, Tabone, Tania, Christie, Elizabeth L., Crowhurst, Meredith O., Layton, Judith E., Shepherd, Iain T., Nixon, Susan J., Parton, Robert G., Zon. Leonard I., Stainier, Didier Y.R., Lieschke, Graham J. and Heath, Joan K. (2009) Abnormal Nuclear pore formation triggers apoptosis in the intestinal epithelium of elys-Deficient zebrafish. Gastroenterology, 136 3: 902-911.e7. doi:10.1053/j.gastro.2008.11.012 125   18 Cited 23 times in Scopus23 0
Nagaraj, Shivashankar H. and Reverter, Antonio (2011) A Boolean-based systems biology approach to predict novel genes associated with cancer: Application to colorectal cancer. BMC Systems Biology, 5 35.1-35.15. doi:10.1186/1752-0509-5-35 79   13 Cited 19 times in Scopus19 0
Burrage, K, Burrage, PM and Belward, JA (1997) A bound on the maximum strong order of stochastic Runge-Kutta methods for stochastic ordinary differential equations. BIT Numerical Mathematics, 37 4: 771-780. doi:10.1007/BF02510351 70   11 0
Malintan, Nancy, Nguyen, Tam H, Han, Liping, Latham, Catherine F., Osborne, Shona L., Wen, Peter, Lim, Siew, Joo, Tiffany, Sugita, Shuzo, Collins, Brett M. and Meunier, Frederic A. (2009) Abrogating Munc18-1 SNARE complex interaction has limited impact on exocytosis in PC12 cells. The Journal of Biological Chemistry, 284 32: 21637-21646. doi:10.1074/jbc.M109.013508 199   20 Cited 21 times in Scopus21 0
Ghosh, Shibaji K., Somanadhan, Brinda, Tan, Kevin S.-W., Butler, Mark S. and Lear, Martin J. (2012) Absolute configuration and total synthesis of a novel antimalarial lipopeptide by the de novo preparation of chiral nonproteinogenic amino acids. Organic Letters, 14 6: 1560-1563. doi:10.1021/ol300293a 85   7 Cited 7 times in Scopus7 0
Urban, Sylvia and Capon, Robert J. (1996) Absolute sterochemistry of puupehenone and related metabolites. Journal of natural products, 59 9: 900-901. doi:10.1021/np9603838 85   35 Cited 32 times in Scopus32 0
Pun, K. K., Chan, W. L., Lau, P., Ho, P. W. M. and Wang, C. (1990) Absorption of intranasal salmon-calcitonin in normal subjects and hypogonadic men. Calcified Tissue International, 46 2: 130-132. doi:10.1007/BF02556097 52   4 Cited 2 times in Scopus2 0
Muttenthaler, Markus, Dutertre, Sebastien, Wingerd, Joshua S., Aini, John W., Walton, Hugh, Alewood, Paul F. and Lewis, Richard J. (2012) Abundance and diversity of Conus species (Gastropoda: Conidae) at the northern tip of New Ireland province of Papua New Guinea. Nautilus, 126 2: 47-56. 188 3 0 Cited 0 times in Scopus0
Wang, Qian, Song, Fuhang, Xiao, Xue, Huang, Pei, Li, Li, Monte, Aaron, Abdel-Mageed, Wael M., Wang, Jian, Guo, Hui, He, Wenni, Xie, Feng, Dai, Huanqin, Liu, Miaomiao, Chen, Caixia, Xu, Hao, Liu, Mei, Piggott, Andrew M., Liu, Xueting, Capon, Robert J. and Zhang, Lixin (2013) Abyssomicins from the South China Sea deep-sea sediment Verrucosispora sp.: natural thioether michael addition adducts as antitubercular prodrugs. Angewandte Chemie International Edition, 52 4: 1231-1234. doi:10.1002/anie.201208801 80   15 Cited 17 times in Scopus17 3
Ivanova, Natalia, Tringe, Susannah G., Liolios, Konstantinos, Liu, Wen-Tso, Morrison, Norman, Hugenholtz, Philip and Kyrpides, Nikos C. (2010) A call for standardized classification of metagenome projects. Environmental Microbiology, 12 7: 1803-1805. doi:10.1111/j.1462-2920.2010.02270.x 84   10 Cited 11 times in Scopus11 0
Englebretsen, D. R., Garnham, B. and Alewood, P. F. (2002) A cassette ligation strategy with thioether replacement of three Gly-Gly peptide bonds: Total chemical synthesis of the 101 residue protein early pregnancy factor [psi(CH2S)(28-29,56-57,76-77)]. Journal of Organic Chemistry, 67 17: 5883-5890. doi:10.1021/jo016121e 186   11 Cited 11 times in Scopus11 0
Vetter, Irina and Lewis, Richard J. (2011). Accelerated biodiscovery of ion channel modulators. In: 84th Annual Meeting of the Japanese Pharmacological Society/11th Southeast Asian Western Pacific Regional Meeting of Pharmacologists, Yokohama, Japan, (22P-22P). 22-24 March 2011. 38   0
Miranda, LP and Alewood, PF (1999) Accelerated chemical synthesis of peptides and small proteins. Proc. Natl Acad. Sci, 96 4: 1181-1186. doi:10.1073/pnas.96.4.1181 128   56 Cited 57 times in Scopus57 0
Burrage, Kevin, Mac, Shev and Tian, Tianhai (2006). Accelerated leap methods for simulating discrete stochastic chemical kinetics. In: Christian Commault and Nicholas Marchand, Lecture Notes in Control and Information Sciences: 2nd Multidisciplinary International Symposium on Positive Sys. 2nd Multidisciplinary International Symposium on Positive Sys, Grenoble, France, (359-366). 30 August -1 September, 2006. doi:10.1007/11757344_46 202   3 Cited 3 times in Scopus3 0
Gagen, M. J. and Mattick, J. S. (2005) Accelerating, hyperaccelerating, and decelerating networks. Physical Review E, 72 1: . doi:10.1103/PhysRevE.72.016123 242   19 Cited 19 times in Scopus19 0
Mattick, JS and Gagen, MJ (2005) Accelerating networks. Science, 307 5711: 856-858. doi:10.1126/science.1103737 128   54 Cited 59 times in Scopus59 0
Davies, Jamie A., Little, Melissa H., Aronow, Bruce, Armstrong, Jane, Brennan, Jane, Lloyd-MacGilp, Sue, Armit, Chris, Harding, Simon, Piu, Xinjun, Roochun, Yogmatee, Haggarty, Bernard, Houghton, Derek, Davidson, Duncan and Baldock, Richard (2012). Access and use of the GUDMAP Database of genitourinary development. In Odysse Michos (Ed.), Kidney development: Methods and protocols (pp. 185-201) New York , NY, United States: Humana Press. doi:10.1007/978-1-61779-851-1_17 108 2 1
Jia, Husen, Liggins, John R. and Chow, Wah Soon (2012) Acclimation of leaves to low light produces large grana: the origin of the predominant attractive force at work. Philosophical Transactions of the Royal Society B: Biological Sciences, 367 1608: 3494-3502. doi:10.1098/rstb.2012.0071 7   1 Cited 1 times in Scopus1 0
Poole, Elizabeth S., Young, David J., Askarian-Amiri, Marjan E ., Scarlett, Debbie-Jane G. and Tate, Warren P. (2007) Accommodating the bacterial decoding release factor as an alien protein among the RNAs at the active site of the ribosome. Cell Research, 17 7: 591-607. doi:10.1038/cr.2007.56 177   3 Cited 2 times in Scopus2 0
Trewick, Anne L., El-Sayed Moustafa, Julia S., De Smith, Adam J., Froguel, Philippe, Greve, Gottfried, Njolstad, Pal R., Coin, Lachlan J. M. and Blakemore, A.I.F. (2011) Accurate single-nucleotide polymorphism allele assignment in trisomic or duplicated regions by using a single base-extension assay with MALDI-TOF mass spectrometry. Clinical Chemistry, 57 8: 1188-1195. doi:10.1373/clinchem.2010.159558 8   1 Cited 0 times in Scopus0 0
Burrage, Kevin and Lythe, Grant (2009) Accurate stationary densities with partitioned numerical methods for stochastic differential equations. Siam Journal on Numerical Analysis, 47 3: 1601-1618. doi:10.1137/060677148 65   3 Cited 4 times in Scopus4 0
Bradford, Stephen T., Wilhelm, Dagmar, Bandiera, Roberto, Vidal, Valerie, Schedl, Andreas and Koopman, Peter (2009) A cell-autonomous role for WT1 in regulating Sry in vivo. Human Molecular Genetics, 18 18: 3429-3438. doi:10.1093/hmg/ddp283 103   22 Cited 24 times in Scopus24 0
Sierecki, E., Giles, N., Polinkovsky, M., Moustaqil, M., Alexandrov, K. and Gambin, Y. (2013) A cell-free approach to accelerate the study of protein-protein interactions in vitro. Interface Focus, 3 5: . doi:10.1098/rsfs.2013.0018 74   6 Cited 6 times in Scopus6 0
Dutertre, S., Ulens, C, Buttner, R, Fish, A, van Elk, R, Kendel, Y, Hopping, G., Alewood, P. F., Schroeder, C., Nicke, A, Smit, AB, Sixma, TK and Lewis, R. J. (2007) AChBP-targeted alpha-conotoxin correlates distinct binding orientations with nAChR subtype selectivity. Embo Journal, 26 16: 3858-3867. doi:10.1038/sj.emboj.7601785 156   83 Cited 82 times in Scopus82 0
Spillman, Natalie J., Allen, Richard J. W. and Kirk, Kiaran (2008) Acid extrusion from the intraerythrocytic malaria parasite is not via a Na+/H+ exchanger. Molecular and Biochemical Parasitology, 162 1: 96-99. doi:10.1016/j.molbiopara.2008.07.001 53   22 Cited 23 times in Scopus23 0
Saliba, Kevin J., Allen, Richard J. W., Zissis, Stephanie, Bray, Patrick G., Ward, Stephen A. and Kirk, Kiaran (2003) Acidification of the malaria parasite's digestive vacuole by a H+-ATPase and a H+-pyrophosphatase. The Journal of Biological Chemistry., 278 8: 5605-5612. doi:10.1074/jbc.M208648200 41   56 Cited 61 times in Scopus61 0
Capon, RJ and Barrow, RA (1998) Acid-mediated conversion of methylene-interrupted bisepoxides to tetrahydrofurans: A biomimetic transformation. Journal of Organic Chemistry, 63 1: 75-83. doi:10.1021/jo971147k 60   27 Cited 32 times in Scopus32 0
Frith, Martin C., Valen, Eivind, Krogh, Anders, Hayashizaki, Yoshihide, Carninci, Piero and Sandelin, Albin (2008) A code for transcription initiation in mammalian genomes. Genome Research, 18 1: 1-12. doi:10.1101/gr.6831208 50   70 Cited 75 times in Scopus75 0
Huang, Yen-Hua, Colgrave, Michelle L., Kotze, Andrew C. and Craik, David J. (2008). A combined chemistry and biology approach to the development of novel agents for protection against livestock pests. In: Poster presentation abstracts 30th European Peptide Symposium (30EPS). 30th European Peptide Symposium (30EPS), Helsinki, Finland, (93-93). 31 August – 5 September 2008. doi:10.1002/psc.1090 51   0 0
Deplazes, E., van Bronswijk, W., Zhu, F., Barron, L.D., Ma, S., Nafie, L.A. and Jalkanen, K.J. (2008) A combined theoretical and experimental study of the structure and vibrational absorption, vibrational circular dichroism, Raman and Raman optical activity spectra of the L-histidine zwitterion. Theoretical Chemistry Accounts, 119 1-3: 155-176. doi:10.1007/s00214-007-0276-8 53   45 Cited 46 times in Scopus46 0
Frayling, Timothy M., Timpson, Nicholas J., Weedon, Michael N., Zeggini, Eleftheria, Freathy, Rachel M., Lindgren, Cecilia M., Perry, John R. B., Elliott, Katherine S., Lango, Hana, Rayner, Nigel W., Shields, Beverley, Harries, Lorna W., Barrett, Jeffrey C., Ellard, Sian, Groves, Christopher J., Knight, Bridget, Patch, Ann-Marie, Ness, Andrew R., Ebrahim, Shah, Lawlor, Debbie A., Ring, Susan M., Ben-Shlomo, Yoav, Jarvelin, Marjo-Riitta, Sovio, Ulla, Bennett, Amanda J., Melzer, David, Ferrucci, Luigi, Loos, Ruth J. F., Barroso, Inês, Wareham, Nicholas J., Karpe, Fredrik, Owen, Katharine R., Cardon, Lon R., Walker, Mark, Hitman, Graham A., Palmer, Colin N. A., Doney, Alex S. F.Graham A., Morris, Andrew D., Smith, George Davey, Hattersley, Andrew T., McCarthy, Mark I. and Wellcome Trust Case Control (2007) A common variant in the FTO gene is associated with body mass index and predisposes to childhood and adult obesity. Science, 316 5826: 889-894. doi:10.1126/science.1141634 116   1675 Cited 1667 times in Scopus1667 99
Mahatmanto, Tunjung, Poth, Aaron, Mylne, Joshua S. and Craik, David J. (2014) A comparative study of extraction methods reveals preferred solvents for cystine knot peptide isolation from Momordica cochinchinensis seeds. Fitoterapia, 95 22-33. doi:10.1016/j.fitote.2014.02.016 30   0 Cited 0 times in Scopus0 0
Halai, Reena, Croker, Daniel E., Suen, Jacky Y., Fairlie, David P. and Cooper, Matthew A. (2012) A comparative study of impedance versus optical label-free systems relative to labelled assays in a predominantly Gi coupled GPCR (C5aR) signalling. Biosensors, 2 3: 273-290. doi:10.3390/bios2030273 84   Cited 4 times in Scopus4 0
Iqbal, M. J., Maguire, T. L., Meksem, K., Yegaeshi, S., Triwitayakorn, K., Schulz, J., Grimmond, S. M., Gresshoff, P.M. and Lightfoot, D. (2002). A comparison by cDNA microarray of mRNA abundance in Glycine max and Arabidopsis thaliana roots in response to Fusarium solani f.sp. glycines infection. In: The International Conference on the Status of Plant, Animal and Microbe Genomes Research. International Plant & Animal Genome Conference, San Diego, (260-260). 12-16 January 2002. 115  
Marshall, H., Nolan, T., Roberton, D., Richmond, P., Lambert, S. W., Jacquet, J. M. and Schuerman, L. (2006) A comparison of booster immunisation with a combination DTPa-IPV vaccine or DTPa plus IPV in separate injections when co-administered with MMR, at age 4–6 years. Vaccine, 24 35-36: 6120-6128. doi:10.1016/j.vaccine.2006.05.017 232   7 Cited 12 times in Scopus12 0
Church, Jeffrey S., Woodhead, Andrea L., Walker, Andrew A. and Sutherland, Tara D. (2014) A comparison of convergently evolved insect silks that share β-sheet molecular structure. Biopolymers, 101 6: 630-639. doi:10.1002/bip.22431 14   0 Cited 0 times in Scopus0 0
Nourse, A., Trabi, M., Daly, N. L. and Craik, D. J. (2004) A comparison of the self-association behavior of the plant cyclotides kalata B1 and kalata B2 via analytical ultracentrifugation. Journal of Biological Chemistry, 279 1: 562-570. doi:10.1074/jbc.M306826200 91   44 Cited 45 times in Scopus45 0
Holmes, Rebecca, Williamson, Christine, Peters, Jo, Denny, Paul and Wells, Christine (2003) A comprehensive transcript map of the mouse Gnas imprinted complex. Genome Research, 13 6B: 1410-1415. doi:10.1101/gr.955503 27   47 Cited 47 times in Scopus47 0
Brinkworth, R. I., Horne, J. and Kobe, B. (2002) A computational analysis of substrate binding strength by phosphorylase kinase and protein kinase A. Journal of Molecular Recognition, 15 2: 104-111. doi:10.1002/jmr.563 88   9 Cited 8 times in Scopus8 0
Jiang, J., Wang, X. D., He, K., Li, X., Chen, C. M., Sayeski, P. P., Waters, M. J. and Frank, S. J. (2004) A conformationally sensitive GHR [growth hormone (GH) receptor] antibody: Impact on GH signaling and GHR proteolysis. Molecular Endocrinology, 18 12: 2981-2996. doi:10.1210/me.2004-0102 116   30 Cited 32 times in Scopus32 0
Paczkowski, FA, Bauman, S, Sharpe, LA, Dutertre, S and Lewis, RJ (2007). A conopeptide view of the norepinephrine transporter (NET), an integral membrane Na+- and CI-dependent transporter.. In: Biophysical Journal: 51st Annual Meeting of the Biophysical Society. 51st Annual Meeting of the Biophysical Society, Baltimore, (264A-264A). 3-7 March 2007. 85   0
Ovchinnikov, Dmitry A., DeBats, Claire E. E., Sester, David P., Sweet, Matthew J. and Hume, David A. (2010) A conserved distal segment of the mouse CSF-1 receptor promoter is required for maximal expression of a reporter gene in macrophages and osteoclasts of transgenic mice. Journal of Leukocyte Biology, 87 5: 815-822. doi:10.1189/jlb.0809557 67   9 Cited 8 times in Scopus8 0
Seizl, Martin, Hartmann, Holger, Hoeg, Friederike, Kurth, Fabian, Martin, Dietmar E., Soding, Johannes and Cramer, Patrick (2011) A conserved GA element in Tata-Less RNA polymerase II promoters. PLoS One, 6 11: . doi:10.1371/journal.pone.0027595 13   8 Cited 10 times in Scopus10 0
Simonsen, S. M., Sando, L., Ireland, D. C., Colgrave, M. L., Bharathi, R., Goransson, U. and Craik, D. J. (2005) A continent of plant defense peptide diversity: Cyclotides in Australian Hybanthus (Violaceae). Plant Cell, 17 11: 3176-3189. doi:10.1105/tpc.105.034678 90   97 Cited 88 times in Scopus88 0
Hough, Shelley R., Laslett, Andrew L., Grimmond, Sean B., Kolle, Gabriel and Pera, Martin F. (2009) A continuum of cell states spans pluripotency and lineage commitment in human embryonic stem cells. PLoS One, 4 11: x-x. doi:10.1371/journal.pone.0007708 84   60 Cited 63 times in Scopus63 0
Cooper, M. A., Lucas, M. A., Taylor, J. M., Ward, A. D. and Williamson, N. M. (2001) A convenient method for the aromatic amino-Claisen rearrangement of N-(1,1-disubstituted-allyl)anilines. Synthesis, 4: 621-625. 92   27 Cited 28 times in Scopus28
Bourne, Gregory T., Nielson, Jonathon L., Coughlan, Justin F., Darwen, Paul, Campitelli, Marc R., Horton, Douglas A., Rhumann, Andreas, Love, Stephen G., Tran, Tran T. and Smythe, Mark L. (2005). A convenient method for the synthesis of cyclic peptide libraries. In John Howl (Ed.), Peptide synthesis and applications (pp. 151-166) Clifton, NJ, USA: Humana Press. 135  
Reid, Robert C., Abbenante, Giovanni, Taylor, Stephen M. and Fairlie, David P. (2003) A convergent solution-phase synthesis of the macrocycle Ac-Phe-[Orn-Pro-D-Cha-Trp-Arg], a potent new antiinflammatory drug. Journal of Organic Chemistry, 68 11: 4464-4471. doi:10.1021/jo034228r 230   33 Cited 33 times in Scopus33 0

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